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FoxoTech
/
methylcheck
Python-based Illumina methylation array quality control software.
MIT License
10
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7
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v0.5.9 working feature/mds embedded
#32
marcmaxson
closed
4 years ago
0
v0.5.5 Invalid string grayscale value '-99' error in run_qc, pdf.savefig
#31
marcmaxson
closed
4 years ago
4
methylprep -all - batch-size memory does not clear between batches
#30
moranr7
closed
4 years ago
2
run_qc - failures
#29
moranr7
closed
3 years ago
1
v0.5 (report pdf)
#28
marcmaxson
closed
4 years ago
1
v0.4.0
#27
marcmaxson
closed
4 years ago
0
give reasons why a probe was excluded
#26
jmschrei
opened
4 years ago
0
passing in transposed dataframe causes kernel to crash
#25
jmschrei
closed
3 years ago
2
fixed bug
#24
marcmaxson
closed
4 years ago
0
improved feature/color groups v.2.4
#23
marcmaxson
closed
4 years ago
0
update probe exclusion list (996 new probes deemed sketchy by Illumina, Sep '19)
#22
marcmaxson
closed
3 years ago
1
Renamed repo
#21
marcmaxson
closed
5 years ago
0
0.2.4 minor fixes (exclude_probes, combine_mds)
#20
marcmaxson
closed
5 years ago
0
Dev
#19
marcmaxson
closed
5 years ago
0
improved MDS plots
#18
marcmaxson
closed
5 years ago
0
CircleCI and coveralls.io fix
#17
marcmaxson
closed
5 years ago
0
Completely refactored code; added CLI and unit testing
#16
marcmaxson
closed
5 years ago
0
Integrations: circleci, appveyor
#15
marcmaxson
closed
5 years ago
0
Refactored code. +CLI. Methpype integration.
#14
marcmaxson
closed
5 years ago
0
Remove files from commit history
#13
nhrigby
closed
5 years ago
2
Automated QC prototype
#12
rhiever
closed
4 years ago
3
Add function for M vs U plot
#11
nhrigby
closed
4 years ago
2
Review 'minfi' functions for QC
#10
brianchengithub
closed
3 years ago
2
Mirror Genome Studio QC functionality for raw data
#9
nhrigby
closed
3 years ago
2
Age estimation
#8
brianchengithub
closed
5 years ago
3
Cross-reactive and polymorphic probes
#7
brianchengithub
closed
5 years ago
10
QC: Use detection p-values for probes to determine sample and probe failures
#6
brianchengithub
closed
3 years ago
3
Cell count estimation
#5
brianchengithub
opened
5 years ago
2
SVA and ComBat
#4
brianchengithub
opened
5 years ago
2
BMIQ normalization
#3
brianchengithub
closed
5 years ago
0
DASEN normalization
#2
brianchengithub
closed
5 years ago
0
Need to be able to identify probes with low variation
#1
nhrigby
opened
5 years ago
2
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