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FranzKrah / rMyCoPortal

rMyCoPortal - an R package to interface with the Mycology Collections Portal
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mycoportal error #2

Open microbesatBU opened 1 year ago

microbesatBU commented 1 year ago

Hello Franz!

I just found your paper and program, which is awesome! I'm having an issue just doing simple pull down of Amanita muscaria records using the mycoportal command. When I run:

am.rec <- mycoportal(taxon = "Amanita muscaria")

I receive this error: Initialize server Port is allocated Error in if (dr$getStatus()$ready) cat(dr$getStatus()$message[1], "\n") : argument is of length zero

I downloaded and opened Docker, which seems to be working. If you have any ideas on how to help, I would be very grateful!

Thank you for your help!!

Jenny Bhatnagar

FranzKrah commented 1 year ago

Seems to be a Docker issue. Did you run the test in docker? Also sometimes the system denies access of R to Docker… Franz

On 22. Sep 2022, at 22:07, Bhatnagar Lab of Microbial Ecology @.***> wrote:

 Hello Franz!

I just found your paper and program, which is awesome! I'm having an issue just doing simple pull down of Amanita muscaria records using the mycoportal command. When I run:

am.rec <- mycoportal(taxon = "Amanita muscaria")

I receive this error: Initialize server Port is allocated Error in if (dr$getStatus()$ready) cat(dr$getStatus()$message[1], "\n") : argument is of length zero

I downloaded and opened Docker, which seems to be working. If you have any ideas on how to help, I would be very grateful!

Thank you for your help!!

Jenny Bhatnagar

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