FunctionLab ExPecto issues

FunctionLab / ExPecto

predicting expression effects of human genome variants ab initio from sequence

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issues

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Beluga output.

#32 stepanv1 opened 11 months ago
0
GRCh38 vs hg19

#31 Miaoyuanyuan777 opened 1 year ago
2
How to load the model shown in this repo

#30 houruiyan opened 1 year ago
4
Cannot find out the Xreducedall.2002.npy

#29 houruiyan closed 1 year ago
0
Getting Beluga outputs before spatial transformation

#28 rastogiruchir opened 1 year ago
0
Download resources link no longer active

#27 pkathail closed 1 year ago
2
Could expecto accepts fasta input and return the prdicted tissue-specific expression values?

#26 WeiCSong opened 2 years ago
2
Cell Line Description for Belgua

#25 imk1 closed 2 years ago
2
Sequences < 1,000bp

#24 imk1 opened 2 years ago
9
How to repeat file Xreducedall.2002.npy for another organisms

#23 Jasonxu0109 opened 2 years ago
4
averaging forward and reverse strand from output of chromatin.py

#22 cmlakhan opened 3 years ago
2
The representative TSS site

#21 ivyhzau opened 4 years ago
1
difference of the result between predict.py and website (HumanBase)

#20 zofieLin opened 4 years ago
1
About the download of 2002 feature files

#19 Licko0909 opened 4 years ago
6
module 'pandas' has no attribute 'match' while running predict.py

#18 edg1983 closed 4 years ago
1
System requirements for larger input

#17 washedgram opened 4 years ago
0
NA values after using BEDOPS closest-features to get associated genes

#16 washedgram closed 4 years ago
2
Ordering of 2002 output tasks of deepsea beluga model

#15 blindauth closed 5 years ago
1
Availability of embeddings for deepsea.beluga model

#14 kmualim closed 5 years ago
5
Regarding chromatin.py

#13 Pankaj01998 closed 5 years ago
1
Some problem in “chromatin.py”, about"deepsea.beluga.2002.cpu" and “Xreducedall.2002.npy”

#12 Licko0909 closed 5 years ago
0
Memory requirements

#11 vagarwal87 closed 5 years ago
2
Incorrect file permissions

#10 evancofer closed 5 years ago
1
Replicating features in resources/Xreducedall.2002.npy

#9 AvantiShri opened 5 years ago
2
Training data

#8 ChongWu-Biostat closed 5 years ago
5
Treatment of TSS itself

#7 jiequan35 closed 6 years ago
2
License for ExPecto

#6 AvantiShri closed 5 years ago
1
Fix for when n samples perfectly divides batchSize

#5 AvantiShri closed 6 years ago
1
About Constraint violation score

#4 kmtiny opened 6 years ago
10
Discrepancy between architecture in paper and architecture in deepsea.beluga.2002.cpu

#3 AvantiShri opened 6 years ago
1
geneanno.exp.csv missing one line?

#2 thouis closed 6 years ago
3
Regarding log fold change and predict.py description

#1 jeffmylife closed 6 years ago
1