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FunctionLab
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sei-framework
code to run sei and obtain sei and sequence class predictions
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Val loss doesn't decrease, when train loss changes
#28
Jingyao711
opened
2 months ago
0
Training Issue: Zero Loss Values and "NA" Metrics in SEI Model with Pig Data
#27
zhuofanyan
opened
3 months ago
0
what is projvec_targets.npy and histone_inds.npy
#26
guandailu
opened
4 months ago
0
training loss = 0 auc_test = None
#25
Chailchai
opened
4 months ago
0
Target Names File
#24
e-trop
opened
4 months ago
0
computational time
#23
liameihao
opened
8 months ago
0
conda environment for GPU
#22
hkmztrk
closed
8 months ago
0
Does reverse complement matter when using DNA sequence as input?
#21
WeiCSong
opened
10 months ago
1
will the trained model work for seq short than 4096
#20
jianglch
opened
1 year ago
1
model training error
#19
guandailu
opened
1 year ago
1
Attribution error while predicting chromatin profiles with fasta file
#18
pyareedash
closed
1 year ago
5
From seqclass score to seqclass prediction
#17
JohnsonStev
opened
1 year ago
3
UnboundLocalError: local variable 'i' referenced before assignment
#16
ghm17
opened
1 year ago
4
CUDA out of memory.
#15
tzhu-bio
opened
1 year ago
1
NA on precision and roc_auc
#14
joonan30
closed
1 year ago
2
Sei predictor does not use up full GPU available on the machine
#13
MagpiePKU
closed
1 year ago
3
Retrain on subset of chromatin profiles
#12
smasotti21
closed
1 year ago
3
Error Kindly help
#11
amitpande74
closed
1 year ago
3
Major update of the scripts in this repository
#10
kathyxchen
closed
1 year ago
0
Prediction using sequences (vep_cli_seq.py)
#9
pyareedash
closed
1 year ago
2
maximum recursion depth exceeded while calling a Python object
#8
aojielian
closed
1 year ago
3
are the variant predictions done on positive strand sequences?
#7
okurman
closed
2 years ago
4
KeyError: 'state_dict'
#6
Hatoonli
closed
2 years ago
4
Why the value of seqclass_max_absdiff can greater than 2?
#5
LDS-axel
closed
2 years ago
0
Why the value of seqclass_max_absdiff can greater than 2?
#4
LDS-axel
closed
2 years ago
1
Submit fasta file in DeepSEA webtool
#3
yanwang271
closed
2 years ago
1
Could sei accept sequence (fasta or character) as input?
#2
WeiCSong
closed
2 years ago
1
center_bin_to_predict in train.yml
#1
nsamzhao
closed
2 years ago
1