FundyPhytoPhys prochlorococcus_o2 issues

FundyPhytoPhys / prochlorococcus_o2

Assembly and analyses of data on responses of Prochlorococcus to low O2.

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Fix Potential temperate niche table caption.

#52 mireillesavoie opened 5 months ago
0
Role of PGP in DNA repair

#51 NaamanOmar closed 5 months ago
3
DNA repair figure-confirm presence of Phosphoglycolate phosphatase

#50 mireillesavoie closed 5 months ago
0
Correct README names in subfolders

#49 NaamanOmar closed 6 months ago
3
How to write tables to .csv

#48 mireillesavoie closed 7 months ago
1
Create new .tiff figure name for DNARepairFig named Fig12.tiff in "Output/PLOSFiguresRound1

#47 mireillesavoie closed 7 months ago
1
Create .tiff for ProchlorococcusEnzymeKms figure . Name it 'Fig11.tiff' in "Output/PLOSFiguresRound1' folder

#46 mireillesavoie closed 7 months ago
3
Create .tiff for "ProchlorococcusLightEnzymes.png". Name it S5_Fig.tiff in "Output/PLOSFiguresRound1' folder

#45 mireillesavoie closed 7 months ago
2
Fix angle of x-axis text for DNA repair and Light enzyme figures - 1st enzyme cut off

#44 mireillesavoie closed 7 months ago
1
Remove italicized strain names from fig. cap because fig. cap are all italicized when rendered to .docx.

#43 mireillesavoie closed 7 months ago
1
Line spacing on Tables

#42 NaamanOmar closed 7 months ago
0
Remove hyphen from 'photo-lyase' in DNA repair and light enzyme figures

#41 mireillesavoie closed 7 months ago
1
fix legend for PURplots make 'P' italicize in P value

#40 mireillesavoie closed 7 months ago
2
Remove all capital letters from y-axis title of PAR and PURplots and overlay plots

#39 mireillesavoie closed 7 months ago
0
Genome Figures Rmd working on GitHub

#38 NaamanOmar closed 7 months ago
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Add a link connecting this GitHub repo to the OceanProteinPortal Repository

#37 NaamanOmar closed 4 months ago
1
Add discussion re genes encoding light

#36 mireillesavoie closed 7 months ago
1
Mireille add discussion re: Bagby and Chisholm respiration

#35 mireillesavoie closed 7 months ago
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If we use the cladeProchlor figure, factor the clades so LLI is before LLII/III and LLIV

#34 mireillesavoie closed 7 months ago
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ADD METHODS and Material for DNA Repair and for light dependent Enzymes

#33 mireillesavoie closed 7 months ago
1
Chage red light color to a light red shade for all figures

#32 mireillesavoie closed 7 months ago
0
PUR and growth responses section: 'imposed PUR' or 'absorbed PUR' or 'imposed PAR'

#31 mireillesavoie closed 7 months ago
1
Start of a sentence is it Prochlorococcus marinus or P. marinus? Emily Austen comments for my thesis-said no abbreviation at start of sentence.

#30 mireillesavoie closed 8 months ago
0
Fix non italized strain genus names in citations in Zotero

#29 mireillesavoie closed 7 months ago
1
remove linetypes from WL & photperiod from legend for blue vs. red PUR figure

#28 mireillesavoie closed 6 months ago
1
Supplementary Table of Genes and EC and KO numbers

#27 NaamanOmar closed 7 months ago
1
Fix figure captions for all Photoperiod figures with shapes , 4hr = square

#26 mireillesavoie closed 8 months ago
0
Change shapes for 4 hr to #15 for all figures

#25 mireillesavoie closed 8 months ago
0
Protein figure- remove 2.5uM from MED4, color bars according to WL, cols= Par-ue, rows= O2

#24 mireillesavoie closed 8 months ago
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MC annotated figure change aquarium to bath

#23 mireillesavoie closed 7 months ago
0
Make blue, red PUR fit figure legend bigger

#22 mireillesavoie closed 8 months ago
0
Change symbol for 4 hr photoperiod to solid

#21 mireillesavoie closed 8 months ago
1
Blue,Red PUR figure has wrong legend for color, White LED instead of red and blue is labelled red

#20 mireillesavoie closed 8 months ago
1
Confirm the legend size for linetype is ok for all figures

#19 mireillesavoie closed 7 months ago
0
GAM figure-remove BOLD from x-axis 'Photoperiod (h)

#18 mireillesavoie closed 7 months ago
0
GAM figures put y-axis back on blue GAMS but not the title

#17 mireillesavoie closed 5 months ago
3
fix fig caption not knitting to word for figure 12 and 13

#16 mireillesavoie closed 8 months ago
0
Change y-axis title for representative growth fits figure from chlorophyll proxy to chlorophyll specific

#15 mireillesavoie closed 8 months ago
0
Add Aurora citations

#14 GitHubDoug closed 8 months ago
0
Aurora Ocean Protein Results Text

#13 GitHubDoug closed 7 months ago
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Naaman Genomics Materials & Methods & Figure edits

#12 GitHubDoug closed 7 months ago
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Import of annotated protein immunoblot figures path broken

#11 GitHubDoug closed 8 months ago
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GrowthPUR figure composite not correct

#10 GitHubDoug closed 8 months ago
0
Sync Manuscript_O2.bib in Zotero to GitHub

#9 mireillesavoie closed 8 months ago
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Fix YAML affiliation problem

#8 mireillesavoie closed 8 months ago
2
Fix captions

#7 mireillesavoie closed 7 months ago
0
Pur fits go after envirnmental ,

#6 mireillesavoie closed 8 months ago
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Possibly Move the Par to before GAM no need for fits

#5 mireillesavoie closed 8 months ago
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Materials and Method for Ocean Portal sections

#4 mireillesavoie closed 8 months ago
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Fix title for Electron Transport Complexes figure

#3 mireillesavoie closed 8 months ago
0