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GATB
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DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
https://gatb.inria.fr/software/discosnp/
GNU Affero General Public License v3.0
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Problems genotyping loci containing multiple SNPs
#43
ericopolo
opened
1 month ago
1
Problem with kissreads module
#42
Robb-ED
closed
3 months ago
2
Nucleotide diversity from DiscoSnp
#41
clorenzo1
closed
1 year ago
2
Use mktemp for temp file instead of hardcoded name
#40
kbseah
closed
1 year ago
0
Unable to open VCF file in IGV - SAMPLE metainformation line
#39
kbseah
closed
1 year ago
3
Equivalent information between discosnp and STACKS2
#38
clorenzo1
closed
1 year ago
8
Trouble filtering with vcftools
#37
clorenzo1
closed
1 year ago
2
error: there was a problem with readFileName Dumping
#36
clorenzo1
closed
1 year ago
2
error: there was a problem with readFileName Dumping
#35
clorenzo1
closed
1 year ago
3
Multiple reference alleles output
#34
githubgig
closed
2 years ago
3
While creating a docker container for DiscoSnp, I found some small inconsistencies and issues which I fixed.
#33
relshire
closed
2 years ago
1
Problem with VCF creation: an error occurred in determining the filter of close snps (an unmapped SNP is "PASS")
#32
JaredYoung261
closed
1 year ago
3
EXCEPTION: cannot open ./trashme_3684_dsk_partitions_gatb/parts.360
#31
githubgig
closed
2 years ago
4
Call to python 2 in run_discoSNP++.sh
#30
AxVE
closed
2 years ago
2
Problem running discoSnpRad
#29
bifenggang-star
closed
2 years ago
4
Options for .vcf filtering
#28
githubgig
closed
2 years ago
1
Type of Variant (Ty) format error in .vcf
#27
githubgig
closed
2 years ago
1
DiscoSnp VCF record; Ref allele does not match Assembly Used
#26
robertwhbaldwin
closed
2 years ago
8
Remove an additional space in vcf
#25
AxVE
closed
2 years ago
1
Small fixes on run_vcf_creator.sh
#24
AxVE
closed
2 years ago
1
Requires python3 but calls python2
#23
AxVE
closed
2 years ago
1
Using Disco SNP to find sex markers; calling on a cohort with males and females
#22
robertwhbaldwin
closed
2 years ago
1
Mixing of 0-based and 1-based position in the outputed vcf file of DiscoSNP++
#21
jdalino
closed
2 years ago
6
compatibility with HiFi reads
#20
dabitz
closed
2 years ago
3
problem running disco snp
#19
Kedraous
closed
2 years ago
8
SNP ID in VCF file with reference genome
#18
stefanerb89
closed
2 years ago
3
discoSnpRAD and short_read_connector
#17
joannarifkin
closed
2 years ago
4
QUESTION- Is it possible to re-start a run?
#16
CraigMichell
closed
2 years ago
2
Typo in VCF_creator.py
#15
smoe
closed
3 years ago
1
Typos
#14
smoe
closed
2 years ago
0
New release needed
#13
coolkom
closed
2 years ago
8
Distinguishing inherited variants from de novo variants
#12
standage
closed
2 years ago
1
```Number=0/1``` invalid vcf?
#11
nikostr
closed
5 years ago
1
Handle uneven number of reads in the output sam due to secondary alignments
#10
NadiyaSitdykova
closed
5 years ago
0
comparison between pointer and zero
#9
NadiyaSitdykova
closed
2 years ago
1
VCF with mapping and reference genome nucleotide
#8
pierrepeterlongo
closed
2 years ago
0
Error parsing sam input in VCF_creator.py
#7
mikheyev
closed
5 years ago
3
remove -l option for rconnector
#6
cmonjeau
closed
6 years ago
0
fix README
#5
xgaia
closed
6 years ago
2
Fix compatibility to gatb-core v1.3.0
#4
ysard
closed
5 years ago
1
vcf for IGV wont load in IGV
#3
cfblaeb
closed
2 years ago
1
"PCR duplicates" should be removed when using discoSNP++, while detected by BWA
#2
pierrepeterlongo
closed
3 years ago
0
Update VCF_creator.py
#1
sletort
closed
7 years ago
0