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GDKO
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AvP
Automatic evaluation of HGTs
GNU General Public License v3.0
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how is the tree made after classification
#24
lagphase
opened
2 weeks ago
2
HI, i wanna know whats the meaning of "Ingroup" and "EGP"
#23
leech1225
opened
2 weeks ago
8
Error running avp detect: IndexError: list index out of range
#22
bheimbu
closed
3 weeks ago
0
AttributeError: 'str' object has no attribute 'append'
#21
wangzefei446
opened
1 month ago
5
Error: invalid taxonomic rank:
#20
coles5
closed
2 months ago
0
`avp evaluate` runs forever with no progress
#19
bheimbu
closed
2 months ago
10
Create HGTrobustness_parsing
#18
CaroleBelliardo
opened
4 months ago
0
taxonomy_nexus.txt file empty
#17
mgarl-10
opened
5 months ago
7
Clarification on HGT call
#16
bshrestha0
closed
6 months ago
6
I don't want to exclude any species.
#15
maruiqi0710
closed
5 months ago
3
Evaluating intrakingdom HGT and adding lower toxonomic ranks to classification.txt
#14
aldendirks
closed
6 months ago
4
Error parsing GFF3 file for AvP hgt local score analysis
#13
aldendirks
opened
8 months ago
9
how to infer donor species according to result file named fasttree_tree_results.txt_k5.prox.txt
#12
njliangdong
closed
5 months ago
3
something wrong when using diamond with nr database
#11
Kenlly369
closed
7 months ago
4
calculate ai output file empty
#10
mgarl-10
closed
1 year ago
10
Database download error [Swissprot]
#9
byeollee
closed
1 year ago
2
AvP AI index different from Alienness
#8
lyy005
closed
1 year ago
3
Error running classify, IndexError: list index out of range
#7
pyongheng
closed
1 year ago
8
HGT candidates in M.incognita
#6
csxie-666
closed
1 year ago
4
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xee in position 2: invalid continuation byte
#5
alexvasilikop
closed
1 year ago
4
Cannot run program AvP - Uniref database in configuration file
#4
alexvasilikop
closed
1 year ago
1
acc2taxid.py with uniref50 - ValueError: not enough values to unpack (expected 2, got 1)
#3
alexvasilikop
closed
1 year ago
1
TypeError: can only concatenate str (not "list") to str
#2
CongLiu37
closed
1 year ago
1
UnboundLocalError: local variable 'query_hit_id' referenced before assignment
#1
CongLiu37
closed
1 year ago
1