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GENIE-BPC
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genieBPC
Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data
https://genie-bpc.github.io/genieBPC/
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Update `pull_data_synapse` vignette instructions for consortium data access
#147
jalavery
opened
1 month ago
0
Updates for cran release
#146
jalavery
closed
4 months ago
0
CRAN 2.0.0 Release
#145
jalavery
closed
4 months ago
2
Added pat to authentication in .is_connected_to_genie()
#144
slb2240
closed
4 months ago
0
Add NSCLC 3.1-consortium data release
#143
jalavery
closed
5 months ago
0
Update pull_data_synapse and synapse_version
#142
karissawhiting
closed
6 months ago
0
Hk hackathon may2024
#141
karissawhiting
closed
6 months ago
1
Read in var synopsis and apply data labels
#140
slb2240
closed
6 months ago
1
Update pull_data_synapse and synapse_version
#139
hkalvin
closed
6 months ago
0
cBio officially now uses sv instead of fusion
#138
hfuchs5
closed
5 months ago
1
Add NSCLC v3.1-consortium
#137
hfuchs5
closed
5 months ago
3
Update drug_regimen_list to have 1 row per drug, per data release
#136
jalavery
closed
7 months ago
0
Hackathon - Spring 2024
#135
jalavery
closed
6 months ago
0
Fix bug in drug regimen sunburst messaging, add tests for each cancer cohort
#134
jalavery
closed
7 months ago
0
CRAN v1.1.1 Release
#133
jalavery
closed
7 months ago
0
Update drug regimen list dataset to automatically pull drug lists based on most recent = TRUE
#132
jalavery
closed
7 months ago
0
Update create_analytic_cohort.R
#131
jalavery
closed
8 months ago
1
`institution` argument default in `create_analytic_cohort`
#130
karissawhiting
closed
8 months ago
1
Update NSCLC and CRC consortium releases
#129
jalavery
closed
8 months ago
0
Update `synapse_version` to return one row per cohort with most recent release (if most_recent = TRUE)
#128
jalavery
closed
6 months ago
0
Cohort data merging func
#127
hfuchs5
opened
10 months ago
1
Bladder consortium release / add cohort parameter to `synapse_version()`
#126
jalavery
closed
11 months ago
0
Look into checking each level of access for consortium data
#125
karissawhiting
opened
1 year ago
0
Update check on rows/cols for each table in each data release
#124
jalavery
opened
1 year ago
0
Add test for version number / date modified changing
#123
jalavery
opened
1 year ago
0
Add PAT access to functions
#122
karissawhiting
closed
5 months ago
3
Automate Tests Across Data Releases
#121
jalavery
closed
1 year ago
1
Update pull_data_synapse() to not be case sensitive
#120
jalavery
closed
6 months ago
0
synapse PAT access
#119
alexpaynter
closed
5 months ago
0
Error with pull_data_synapse()
#118
andreasmeid
closed
8 months ago
8
Enhance create_analytic_cohort to accept multiple cancers
#117
hfuchs5
closed
1 year ago
0
Error when trying to pull public CRC Synapse table
#116
janickweberpals
closed
1 year ago
5
Updated synapse registration instructions
#115
slb2240
closed
1 year ago
0
Update list of publications on README
#114
slb2240
closed
1 year ago
0
Automate synapse ids
#113
jalavery
closed
1 year ago
1
Update create_analytic_cohort() to except multiple cohorts/version
#112
hfuchs5
opened
1 year ago
2
Change in name and structure from fusions dataset --> structural variant dataset
#111
slb2240
closed
5 months ago
5
Add ref to bioinformatics paper to pagedown
#110
jalavery
closed
1 year ago
0
store automate appen_abc internal function
#109
hfuchs5
closed
1 year ago
0
Update test data
#108
jalavery
closed
1 year ago
0
Fix synapse IDs for CRC data
#107
jalavery
closed
1 year ago
0
Automate Pulling Synapse IDs
#106
jalavery
closed
1 year ago
2
Update synapser instructions
#105
jalavery
closed
1 year ago
0
Update test data
#104
jalavery
closed
1 year ago
1
Update test data
#103
jalavery
closed
1 year ago
0
Incorporate gnomeR into select unique ngs
#102
jalavery
closed
1 year ago
2
Update pull data synapse vignette
#101
slb2240
closed
1 year ago
0
Update pull data synapse vignette
#100
jalavery
closed
1 year ago
2
Add description of differences between genomic data from synapse and cBioPortal
#99
karissawhiting
closed
1 year ago
0
`git push`
#98
jalavery
closed
1 year ago
0
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