GINsim GINsim-python issues

GINsim / GINsim-python

Python bindings for GINsim and bioLQM

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Fix conversion to pyboolnet primes

#21 vincent-noel closed 1 month ago
1
no longer works with openjdk 17

#20 pauleve opened 1 year ago
1
BioLQM models should have an associated initial state

#19 jonrkarr opened 3 years ago
2
Can initial level of nodes be retrieved and set programmatically?

#18 jonrkarr closed 3 years ago
1
Suggestion: make `trace`, `fixpoints`, and `trapspaces` all return the data structure

#17 jonrkarr opened 3 years ago
1
Make the return type of `biolqm.convert_trace` consistent

#16 jonrkarr opened 3 years ago
2
Suggestion: Separate GINsim and biolqm conda/PyPI packages

#15 jonrkarr opened 3 years ago
2
Document requirement for JRE

#14 jonrkarr opened 3 years ago
2
Support reading SBML files with `.xml` extension

#13 jonrkarr opened 3 years ago
4
Provide method to get the versions of GINsim, GINsim-python, biolqm

#12 jonrkarr opened 3 years ago
1
Integrate `ginsim_setup.py` into `setup.py` as custom develop command

#11 jonrkarr opened 3 years ago
0
How can errors in model loading be retrieved?

#10 jonrkarr opened 3 years ago
1
Decouple core functionality from use with Jupyter notebooks

#9 jonrkarr opened 3 years ago
2
Installation from PyPI also requires adding the `GINSim` executable to the system path

#8 jonrkarr closed 3 years ago
5
`ginsim_setup.py` isn't bundled with the PyPI distribution

#7 jonrkarr closed 3 years ago
1
`ginsim.to_nusmv` fails with models with input nodes and initial state

#6 pauleve closed 3 years ago
4
Automatic layout for regulatory graphs (was: Converted bioLQM model graph image is clipped)

#5 stairs closed 4 years ago
12
Adding services access

#4 vincent-noel closed 5 years ago
1
Added function to get network image as png

#3 vincent-noel closed 5 years ago
0
biolqm: Invalid fixpoint returned

#2 pauleve closed 6 years ago
2
Menu for model exportation and manipulation

#1 pauleve closed 6 years ago
0