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Gaius-Augustus
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BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
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An error of stringtie2utr.py
#735
YouxinZhao
closed
10 months ago
5
Duplicate BUSCOs
#734
paul-bio
closed
9 months ago
9
What is the best way to resume braker pipeline if it stops unexpectedly?
#733
jackie-duang
closed
9 months ago
2
docker error: bamtools not installed.
#732
leon945945
closed
9 months ago
6
Error for transcript ID is not unique
#731
YouxinZhao
closed
10 months ago
4
updating compleasm branch
#730
KatharinaHoff
closed
11 months ago
0
renamed helpMod.pm to helpMod_braker.pm
#729
KatharinaHoff
closed
11 months ago
0
Updating compleasm branch
#728
KatharinaHoff
closed
11 months ago
0
Utr from stringtie
#727
KatharinaHoff
closed
11 months ago
0
In braker annotation what are sequence ids start with jg, g and m1-g?
#726
mudithekanayake
closed
11 months ago
1
gtf gff
#725
pengyan19
closed
11 months ago
5
Cannot create temporary file and failed to exectute gmes_petap.pl
#724
dmacguigan
closed
10 months ago
3
stringtie2utr generates multiple five_prime_UTRs and three_prime_UTRs within a gene
#723
spoonbender76
closed
11 months ago
6
IsoSeq trascriptome data
#722
ardy20
closed
9 months ago
1
* in Arthropoda.fa sequences and "Assuming this is not a protein fasta file"
#721
spoonbender76
closed
9 months ago
6
Augustus step not working, empty files
#720
JulieRamMar
opened
11 months ago
5
GeneMark ETP crashes if there are no mapped reads in the bamfile
#719
TomHarrop
opened
11 months ago
2
Reduced BUSCO score with protein and rna input
#718
Kat0610
closed
11 months ago
1
gmhmmp Segmentation fault
#717
huangl07
opened
11 months ago
1
Problems in RUNNING GENEMARK-EX
#716
ChuanzhengWei
closed
11 months ago
8
Problems with GeneMark-EX
#715
Antennaria
closed
11 months ago
1
non-canonical intron branch update from master
#714
KatharinaHoff
opened
11 months ago
0
Fixing Duplicated BUSCOs
#713
SaelinB
closed
11 months ago
1
Using viridiplantae database directly
#712
ardy20
closed
11 months ago
1
prothint seems to hang on some records
#711
splaisan
opened
11 months ago
4
AUGUSTUS new_species.pl fails when running braker.sif in a nextflow script
#710
max-baer
closed
11 months ago
6
Braker GeneMark-ES failing
#709
Zazzyre
closed
9 months ago
3
Busco and number of genes when use the protein support file (in Braker3)
#708
ardy20
closed
11 months ago
6
About BRAKER results are converted to Ensemble format
#707
ld9866
closed
1 year ago
1
Truncated gene models
#706
rpetroll
closed
11 months ago
1
what-to-cite.txt is not up to date
#705
KatharinaHoff
closed
1 year ago
1
Error, file not found: data/training.fna
#704
SowmyaPulapet
opened
1 year ago
2
braker3 failed when running with --prot_seq
#703
woodoo46
closed
1 year ago
6
braker fails on GeneMark step
#702
hoppo
opened
1 year ago
0
fix issue #669
#701
LarsGab
closed
1 year ago
0
braker.gff3 and braker.gtf
#700
woodoo46
closed
1 year ago
1
The most common problem is an expired or not present file ~/.gm_key!
#699
WUYONGJIU59
closed
1 year ago
3
Update braker.pl
#698
KatharinaHoff
closed
1 year ago
0
added gzip support for RNA-Seq reads
#697
LarsGab
closed
1 year ago
0
Can't get past .gm_key issue
#696
Eigne85
closed
1 year ago
5
BRAKER3 - source RM must be specified in the extrinsic config file
#695
JiyangChang
closed
9 months ago
1
allow RNAseq data gzip
#694
sravel
closed
1 year ago
6
Trying to execute an non executable script
#693
gkanogiannis
closed
11 months ago
1
stringtie2utr.py error
#692
1039931841
closed
1 year ago
4
fixed bug in skipGeneMarkETP
#691
LarsGab
closed
1 year ago
0
Incorporating PacBio Isoseq data into BREAKER resulting higher gene duplicate%.
#690
ko0000
closed
1 year ago
2
Ifs verbosity
#689
LarsGab
closed
1 year ago
0
Ifs verbosity
#688
LarsGab
closed
1 year ago
0
ERROR in file bin/braker.pl at line 7852
#687
mloberme
closed
11 months ago
4
Mamba install problems with Spaln
#686
ValeroGracia
closed
1 year ago
2
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