Some systems will not run the get.ld() function properly due to being unable to find bcftools/plink. This is because R does not source your path from your bashrc & does not source it properly even when calling 'source ~/.bashrc'.
To fix it - add a new file called ~/.Renviron and put your bash path in there.
Some systems will not run the get.ld() function properly due to being unable to find bcftools/plink. This is because R does not source your path from your bashrc & does not source it properly even when calling 'source ~/.bashrc'.
To fix it - add a new file called ~/.Renviron and put your bash path in there.