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Geeketics / LocusZooms

Make LocusZoom-like plots with your own LD matrix.
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convert gff3 to your gene format #23

Closed shaoxiong2588 closed 5 months ago

shaoxiong2588 commented 5 months ago

how to convert gff3 to your gene format ""Gencode_GRCh37_Genes_UniqueList2021.txt"

Geeketics commented 5 months ago

Hi, There is code detailing how I converted the original files I had to the gene format files that the code uses. I started with "gtf" format files, so you would have to compare the contents of "gtf" to "gff" files to see if you're missing any info. The minimum your gene file needs for the code to run is five columns, "Gene", "Chrom", "Start", "End", and "Coding".