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Genentech
/
gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
https://genentech.github.io/gReLU/
MIT License
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17
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updated pre-commit hooks
#44
ekageyama
opened
1 week ago
3
WIP: Scan attr
#43
avantikalal
opened
2 weeks ago
0
Support alternative normalization methods
#42
MuhammedHasan
opened
3 weeks ago
1
Add bigwig hdf5-backed dataset
#41
mtvector
opened
3 weeks ago
0
Plans for on disk dataloaders?
#40
mtvector
opened
4 weeks ago
3
[pre-commit.ci] pre-commit autoupdate
#39
pre-commit-ci[bot]
opened
1 month ago
0
Making train_params and model_params functional to add documentation and avoid duplication
#38
gokceneraslan
opened
1 month ago
6
replaced .A with .toarray()
#37
avantikalal
closed
1 month ago
2
allow custom blacklist file
#36
avantikalal
closed
1 month ago
0
fixed bug in pypi-publish workflow
#35
avantikalal
closed
1 month ago
0
Update doc string and input allowances for grelu.sequence.utils.resize
#34
dagarfield
opened
1 month ago
0
Ref and alt reversed in VEP tutorial
#33
dagarfield
opened
1 month ago
0
Poisson losses bug fixes #31
#32
MuhammedHasan
closed
1 month ago
2
Bugs in `PoissonMultinomialLoss` class
#31
MuhammedHasan
closed
1 month ago
1
added reset method to PearsonCorrCoef
#30
avantikalal
closed
1 month ago
1
Add ISM functions and update tutorial
#29
lgunsalus
opened
1 month ago
0
Loading models from the checkpoint leads to package version conflicts
#28
MuhammedHasan
opened
1 month ago
0
`PearsonCorrCoef` not reset correctly
#27
suragnair
closed
1 month ago
0
Add support for half precision (bf16 and fp16) and on device model creation
#26
MuhammedHasan
closed
1 month ago
0
add python gitignore
#25
MuhammedHasan
closed
1 month ago
0
wrong input file pointed by the tutorial 3_train.ipynb
#24
mhfzsharmin
opened
1 month ago
4
'SparseCSCView' object has no attribute 'A'
#23
mhfzsharmin
closed
1 month ago
4
accessing genomes using genomepy
#22
mhfzsharmin
closed
1 month ago
2
convert indices to int8 before stacking
#21
avantikalal
closed
1 month ago
0
fixed device parsing in embed_on_dataset
#20
avantikalal
closed
1 month ago
2
Unexpected device for model. embed_on_dataset
#19
dagarfield
closed
1 month ago
3
added map_location arg in load_model to load model onto any device
#18
avantikalal
closed
1 month ago
3
Training with `poisson_multinomial` + label preprocessing
#17
fteufel
opened
1 month ago
0
get_artifact() project not found error from
#16
colinshew
closed
1 month ago
0
replace bpnetlite with tangermeme
#15
avantikalal
closed
2 weeks ago
1
updated readme with pip command
#14
avantikalal
closed
1 month ago
1
added host and docstrings to resources module
#13
avantikalal
closed
1 month ago
1
Issues import bpnet negatives
#12
Jome0169
closed
1 month ago
4
Switch to modisco-lite PyPI and pin pygenomeviz version
#11
gokceneraslan
closed
2 months ago
0
pyGenomeViz 1.0 broke API
#10
gokceneraslan
closed
2 months ago
0
filter_blacklist doesn't support obtaining custom blacklist from custom genome
#9
varsh7777
closed
1 month ago
2
Reset val/test metrics and losses after every epoch
#8
suragnair
closed
1 month ago
2
Update pypi-publish.yml
#7
avantikalal
closed
2 months ago
0
prevent deepshap from being used with enformer models
#6
avantikalal
closed
2 months ago
0
tangermeme implementation of DeepLift/SHAP
#5
jmschrei
closed
2 months ago
1
Update LICENSE.txt
#4
avantikalal
closed
2 months ago
0
Update CONTRIBUTING.md
#3
gokceneraslan
closed
3 months ago
0
Update README.md
#2
gokceneraslan
closed
3 months ago
0
GitHub actions to test and publish
#1
jkanche
closed
4 months ago
1