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Genentech
/
midasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
https://genentech.github.io/MiDAS
MIT License
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getAllelesForAA
#42
bsb2014
opened
1 week ago
1
Can midasHLA output the inferred protein sequences?
#41
bsb2014
closed
2 weeks ago
1
how to use Match_kir_nomenclature_gene.txt?
#40
alicekiki
opened
7 months ago
1
add missing library import to tutorial
#39
mcjmigdal
opened
7 months ago
0
Add test for variable peptide region
#38
mcjmigdal
closed
8 months ago
1
Fix tutorial to accomodate new amino acid alignments data
#37
mcjmigdal
opened
8 months ago
1
function omnibus_groups_filter
#36
bsb2014
closed
8 months ago
4
Automate hla and kir allele freqeuncies udpates
#35
mcjmigdal
opened
8 months ago
0
Migrate HLA allginemnts to ipdDb BioC package
#34
mcjmigdal
closed
8 months ago
1
Explanation of the result
#33
bsb2014
closed
8 months ago
7
Can not update external data
#32
bsb2014
opened
8 months ago
8
Fixed bug in the hlaToVariable() function
#31
mialaalv
closed
8 months ago
2
Obtain supertypes
#30
xiw588
closed
8 months ago
2
github action to help synchronizing with Bioconductor remote
#29
mcjmigdal
closed
9 months ago
0
How to add covariate information into glm model with midas object
#28
alicekiki
closed
10 months ago
2
Divergaed version numbering in BioC repository
#27
mcjmigdal
closed
9 months ago
6
External data version
#26
bsb2014
closed
10 months ago
0
inference of amino acids
#25
bsb2014
closed
10 months ago
5
midastowide not working
#24
jumoline
closed
8 months ago
2
HLA allele frequency by phenotype/disease
#23
BioinformaNicks
closed
8 months ago
4
KIR module
#22
Pharmacogenetecist
closed
1 year ago
4
Handle missing values
#21
xiw588
closed
1 year ago
9
Error in approx(sp$y, sp$x, xout = cutoff) : need at least two non-NA values to interpolate
#20
bri2020
closed
1 year ago
3
Check for presence of both alleles
#19
mcjmigdal
closed
1 year ago
0
connection timeout when downloading latest datasets
#18
fmobegi
closed
2 years ago
2
"parsingFunctions.R" Does this script only apply to HLA-HD results?
#17
jingydz
closed
3 years ago
2
Imporve missing tidyer error message
#16
mcjmigdal
opened
3 years ago
0
Inheritance model as an required argument to runMiDAS
#15
mcjmigdal
closed
3 years ago
1
Add README
#14
mcjmigdal
closed
3 years ago
0
Bw frequency estimate over 100 bug
#13
mcjmigdal
closed
3 years ago
0
getAllelesForAA does not acept signal peptide amino acid positions (<0)
#12
mcjmigdal
closed
3 years ago
1
Update vignettes
#11
mcjmigdal
closed
3 years ago
0
HLA resolution nomenclature
#10
chammer80
opened
3 years ago
0
sparse @return documentation
#9
mcjmigdal
closed
3 years ago
1
Update vignettes
#8
mcjmigdal
closed
3 years ago
0
Missing Suggests ggpubr
#7
mcjmigdal
closed
3 years ago
1
Experiment type consistency
#6
chammer80
closed
3 years ago
1
Review comments
#5
LTLA
closed
3 years ago
5
Na counted as non carriers
#4
mcjmigdal
closed
3 years ago
0
Bw4/Bw6 frequency estimate takes values > 100%
#3
mcjmigdal
closed
3 years ago
5
Frequency calculation; "NA"s are counted as non-carriers
#2
mcjmigdal
closed
3 years ago
1
Method for MiDAS filtering based on RE pattern
#1
mcjmigdal
closed
1 year ago
0