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Generade-nl / EelSeeds

Scripts used to extract seeds for the European eel genome assembly
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Question about seeds #4

Open Tdanis opened 4 years ago

Tdanis commented 4 years ago

Hi everyone, So I need some help in order to implement TULIP to my data. My first question is, why did you use k-me= 25 ? I have already run kmergenie to my illumina data, and the best predicted k-mer is 81. Are there any criteria which k-mer to choose ?