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GenomicMedLab
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dgipy
Python client for fast access to the Drug-Gene Interaction Database (DGIDb)
MIT License
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feat: integrate cytoscape for graphing
#71
rbasu101
opened
1 week ago
0
cicd: use uv for dependencies
#70
jsstevenson
closed
2 weeks ago
2
feat: create generalized networkx constructor
#69
jsstevenson
closed
2 weeks ago
0
feat!: make more property names consistent
#68
jsstevenson
closed
3 weeks ago
0
cicd: update actions revs
#67
jsstevenson
closed
4 weeks ago
0
feat: standardize data acquisition in queries
#66
jsstevenson
closed
4 weeks ago
0
chore: use one underscore for private functions
#65
jsstevenson
closed
4 weeks ago
0
feat!: use consistent function/arg names
#64
jsstevenson
closed
4 weeks ago
0
Handle failed ANDA/NDA requests
#63
jsstevenson
opened
1 month ago
1
chore: fix EOL
#62
jsstevenson
closed
1 month ago
1
feat!: use dataframe-like structure for query method output
#61
jsstevenson
closed
1 month ago
1
Standardize response data in queries
#60
jsstevenson
closed
4 weeks ago
0
Move non-dgidb methods out of dgidb module
#59
mcannon068nw
opened
1 month ago
0
feat!: use enum constraints for source type input
#58
jsstevenson
closed
1 month ago
0
Use pagination
#57
jsstevenson
opened
1 month ago
3
cicd: change autoformat action name
#56
jsstevenson
closed
1 month ago
1
cicd: fix autoformat conditions
#55
jsstevenson
closed
1 month ago
1
chore: don't use double underscore for private methods
#54
jsstevenson
closed
1 month ago
0
cicd: autoformat queries
#53
jsstevenson
closed
1 month ago
0
feat: Clinical trials lookup function
#52
mcannon068nw
closed
1 month ago
0
Function to grab trial data from ClinicalTrials.gov
#51
mcannon068nw
closed
1 month ago
1
feat: add drug searches to graph_app
#50
rbasu101
closed
1 month ago
1
feat!: restructure query definitions
#49
jsstevenson
closed
2 months ago
0
cicd: update precommit
#48
jsstevenson
closed
2 months ago
0
style: update ruff version
#47
jsstevenson
closed
2 months ago
0
graph_app drug searches.
#46
rbasu101
closed
1 month ago
0
Neo4j export
#45
jsstevenson
opened
3 months ago
0
Fix for graph_app.py
#44
rbasu101
closed
3 months ago
0
Fix graph_app functionality
#43
rbasu101
closed
3 months ago
0
Update pytest response JSON fixtures
#42
rbasu101
opened
3 months ago
0
Handle 'nan' type searches to avoid errors
#41
mcannon068nw
opened
3 months ago
0
build: require python >= 3.10
#40
jsstevenson
closed
3 months ago
0
feat!: restructure modules
#39
jsstevenson
closed
1 month ago
1
chore: remove editor files
#38
jsstevenson
closed
3 months ago
0
build: use setuptools-scm for version
#37
jsstevenson
closed
3 months ago
0
Vcf annotator base
#36
mcannon068nw
closed
3 months ago
2
Ensure integration with Biolink KGX
#35
jsstevenson
opened
5 months ago
1
1.0 release
#34
jsstevenson
opened
5 months ago
0
chore: make type annotations backward compatible
#33
jsstevenson
closed
5 months ago
0
test: mock request calls for core client tests
#32
jsstevenson
closed
5 months ago
1
Some of the filters are kinda useless
#31
jsstevenson
closed
6 months ago
1
Enable caching responses
#30
jsstevenson
opened
6 months ago
0
feat!: use gql library for GraphQL requests
#29
jsstevenson
closed
6 months ago
0
Annotate a VCF
#28
jsstevenson
closed
3 months ago
0
Mock responses for tests
#27
jsstevenson
opened
6 months ago
1
Combine `get_interactions` for drugs and genes
#26
jsstevenson
opened
6 months ago
3
Use `optional`/`union` instead of the pipe symbol for backwards compatiblity
#25
jsstevenson
closed
5 months ago
1
feat: support user config of API endpoint
#24
jsstevenson
closed
6 months ago
0
docs: touch up README
#23
jsstevenson
closed
6 months ago
0
Break graph/dashboard into separate package
#22
jsstevenson
opened
6 months ago
0
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