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GenomicsAotearoa
/
Pangenome-Graphs-Workshop
This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.
https://genomicsaotearoa.github.io/Pangenome-Graphs-Workshop/
GNU General Public License v2.0
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add a note on how to save intermediate graphs during pggb-odgi runs
#20
DininduSenanayake
opened
1 year ago
0
ODGI graphs don't match the ones in material
#19
DininduSenanayake
closed
1 year ago
1
5. Evaluating output : .ob input filenames don't match the outputs generated by pggb
#18
DininduSenanayake
opened
1 year ago
1
recursive change of `ga03793` to `nesi02659`
#17
DininduSenanayake
closed
1 year ago
0
migrate the repo from Alpha to Beta. Then create a new tag for 2023-July
#16
DininduSenanayake
closed
1 year ago
1
rephrase sentences starting with ( or referred as ) "On NeSI" to make it platforms neutral
#15
DininduSenanayake
closed
1 year ago
0
Update 4_Running_pggb.md
#14
jdeligt
closed
1 year ago
1
Update index.md
#13
jdeligt
closed
1 year ago
0
Restructure
#12
jdeligt
closed
1 year ago
1
Slurm script pggb_4Sim.sl as example only
#11
tylermcinnes
closed
1 year ago
0
More documentation required
#10
tylermcinnes
closed
1 year ago
3
Add overview/contents/landing page
#9
tylermcinnes
closed
1 year ago
1
PGGB does not complete
#8
JSBoey
closed
1 year ago
4
Summary/Workflow diagrams
#7
DininduSenanayake
closed
1 year ago
1
add simuG module
#6
DininduSenanayake
closed
1 year ago
1
add pgge module and replace Singularity based deployment
#5
DininduSenanayake
closed
1 year ago
4
Add pggb module and replace singularity container based deployment
#4
DininduSenanayake
closed
1 year ago
1
Demo blocks
#3
JSBoey
opened
1 year ago
0
BUS error ?
#2
DininduSenanayake
closed
1 year ago
3
Confirm the order
#1
DininduSenanayake
closed
1 year ago
3