GenomicsAotearoa / bioinformatics-containers

Docker containers used by cancer-seq-pipeline.
MIT License
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cancer-genomics clinical-genomics health health-genomics pipelines

Docker/Singularity Containers

These containers are being used in the Cancer Seq Pipleline

Current best practice is to create a new directory of the form /tool-version that contains the Dockerfile and any required dependencies. Builds need to be manually pushed to gacancergenomics on docker hub. This will be done after a new pull request for a tool-version has been approved.

To run these containers on singularity run the script sing-build.sh on your HPC cluster to build the singularity images.