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GiantSpaceRobot
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FindFungi
A pipeline for the identification of fungi in public metagenomics datasets
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Any chance of getting an update to Python3 (specifically Python 3.10+) for Ubutnu/Debian 22+
#18
cement-head
closed
1 month ago
1
threshold
#17
daoerxianqiao
opened
2 years ago
1
Run only BLAST and Skewness correction on kraken2 results?
#16
emilyvansyoc
closed
2 years ago
1
database link doesn't work
#15
emilyvansyoc
closed
2 years ago
2
Missing bsub_reports to gather FASTA reads
#14
hmedwards
closed
3 years ago
3
issues with Running FindFungi-0.23.3.sh
#13
sqqsjc
closed
4 years ago
11
Issue with running FindFungi.sh
#12
mradz19
closed
4 years ago
34
assembly_data
#11
tsoratto
closed
3 years ago
1
Use of <<< redirect fails on Ubuntu
#10
kescobo
closed
5 years ago
1
Split the search and merge the results
#9
michoug
closed
4 years ago
1
FASTA fails to be processed
#8
wolfgangrumpf
closed
4 years ago
7
Size kraken db uncompress
#7
michoug
closed
5 years ago
2
Multiple errors/core dumps with FindFungi
#6
wolfgangrumpf
closed
5 years ago
5
Question regarding gathering FASTA reads from taxid step
#5
mhyleung
closed
5 years ago
2
"Completed" but no output files
#4
mhyleung
closed
5 years ago
17
What reads are being blasted?
#3
Fedorov113
closed
5 years ago
1
Sort_parallel not found
#2
mdehollander
closed
5 years ago
11
sqlite3.OperationalError: disk I/O error
#1
yangkl0909
closed
4 years ago
11