GoekeLab xpore issues - Githubissues

GoekeLab / xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

https://xpore.readthedocs.io/

MIT License

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issues

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results interpretation

#30 Huanle closed 9 months ago
8
RNA sequence kit

#29 pabloacera closed 9 months ago
1
weird struct.error when running xpore-diffmod

#28 pabloacera closed 9 months ago
2
Error reports

#27 ploy-np opened 3 years ago
0
Read-level modifications

#26 pabloacera opened 3 years ago
1
change df_events_per_read.loc index

#25 pabloacera closed 3 years ago
1
Error in xpore-dataprep step

#24 madnessfish closed 3 years ago
11
Filtering step

#23 pabloacera closed 3 years ago
2
Dev

#22 ploy-np closed 4 years ago
0
provide a GTF file for transcript to genome mapping

#21 mparker2 closed 9 months ago
1
eventalign files can be gzipped

#20 mparker2 closed 4 years ago
1
read gzipped eventalign tsv?

#19 mparker2 closed 4 years ago
0
Error with xpore-dataprep

#18 lingolingolin closed 9 months ago
16
data-prep genome mapping for species other than homo sapiens

#17 sbultmann closed 3 years ago
2
Make p_overlap as a user option

#16 ploy-np closed 9 months ago
0
--save_models

#15 ploy-np closed 9 months ago
1
Help in the scripts

#14 ploy-np closed 4 years ago
1
Post-processing for prioritisation

#13 ploy-np closed 9 months ago
0
Implement resume for eventalign.hdf5

#12 ploy-np closed 4 years ago
1
Limit the number of reads

#11 ploy-np closed 4 years ago
2
eventaligned.hdf5

#10 ploy-np closed 9 months ago
0
data.json

#9 ploy-np closed 4 years ago
1
Modify io.py and gmm.py to accommodate the case where data are pooled.

#8 ploy-np closed 4 years ago
0
Add "chr", "gene_name" in xpore-dataprep, xpore-diffmod

#7 ploy-np opened 4 years ago
2
Check adjusted p-values

#6 ploy-np closed 4 years ago
0
xpore/scripts/xpore-dataprep: steps

#5 ploy-np closed 9 months ago
3
Installation of all dependencies

#4 ploy-np closed 9 months ago
2
Cluster assignment

#3 ploy-np closed 4 years ago
0
Genome-transcriptome coordinates mapping

#2 ploy-np closed 4 years ago
1
How to deposit large files i.e. test data

#1 ploy-np closed 4 years ago
1