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GoekeLab
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xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
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Add GFF annotation option and change fasta and gtf input flags names
#90
yuukiiwa
closed
2 years ago
0
xpore dataprep error addition
#89
Wardale24
closed
2 years ago
3
What happens when nanopolish model_kmer is NNNNN?
#88
cathoderaymission
closed
8 months ago
2
readGTF function was modified to adapt to non-ensembl GTF input
#87
obenno
closed
2 years ago
2
xpore dataprep empty data.json
#86
cathoderaymission
closed
2 years ago
1
readGTF split issue
#85
obenno
closed
8 months ago
7
add gff as annotation option in addition to gtf
#82
yuukiiwa
closed
2 years ago
0
Request for HEK293 GTF/genome/transcriptome files used in paper
#80
cathoderaymission
closed
2 years ago
0
Feature request: Report on methylation status of individual reads with location
#79
cathoderaymission
opened
2 years ago
0
Feature request: Process GFF files
#78
cathoderaymission
closed
8 months ago
0
xpore diffmod module
#76
Lqh09
closed
2 years ago
0
Positions in the result are 0-based?
#74
loganylchen
closed
2 years ago
0
xpore processing of Epinano Yeast fails
#73
cathoderaymission
closed
8 months ago
10
xpore v2.0 dataprep ERROR
#72
DrDaedalusWHU
closed
8 months ago
10
When will the conda package be updated to 2.0?
#71
oneillkza
closed
2 years ago
2
Update help.rst
#67
jonathangoeke
closed
2 years ago
0
Update README.md
#66
jonathangoeke
closed
2 years ago
0
Prolems about long mRNA reads mapping
#65
lwlive
closed
8 months ago
2
xpore MinION data access
#59
sumin5784
closed
2 years ago
2
replace if statement with KeyError in g2t mapping, add post-processing option, and add xpore wrapper
#58
yuukiiwa
closed
2 years ago
0
remove pyensembl requirement and solve Arabidopsis bug
#57
yuukiiwa
closed
3 years ago
0
remove pyensembl requirement only
#56
yuukiiwa
closed
3 years ago
0
Genome mapping for Arabidopsis in Xpore
#55
Annie-GW
closed
8 months ago
14
xpore-diffmode error
#54
al3xMlt
closed
2 years ago
3
xpore-diffmod hangs on error
#53
callumparr
closed
3 years ago
7
qsub batch jobs
#52
callumparr
closed
3 years ago
2
Update README.md
#51
jonathangoeke
closed
2 years ago
0
remove pyensembl requirement and add m6anet dataprep functions
#50
yuukiiwa
closed
2 years ago
0
Update README.md
#49
jonathangoeke
closed
3 years ago
0
gtf option, fastdataprep, and dataprep intermediate file removal
#48
yuukiiwa
closed
3 years ago
0
Download datasets
#47
q1134269149
closed
8 months ago
4
Guppy software version for base calling
#46
mmiladi
closed
8 months ago
1
Diffmod error output but seems to run.
#45
callumparr
closed
8 months ago
1
Run data prep with --genome flag
#44
callumparr
closed
3 years ago
2
Typical run time and file size
#43
callumparr
closed
3 years ago
4
Not found in index error
#42
callumparr
closed
3 years ago
2
error due to missing start_idx and end_idx headers in eventalign
#41
callumparr
closed
3 years ago
2
Last version not available from pypi
#40
a-slide
closed
8 months ago
8
keep tx_id without tx_version
#39
yuukiiwa
closed
3 years ago
1
run dataprep errors
#38
q1134269149
closed
8 months ago
5
run dataprep error
#37
q1134269149
closed
3 years ago
3
data preparation from raw reads
#36
q1134269149
closed
3 years ago
2
Not m6A knockout sample.
#35
litao1503
closed
3 years ago
4
Option n_processes in xpore-dataprep
#34
lionelus
closed
8 months ago
1
Installation error when i install it with github or pip both
#33
aman21392
closed
3 years ago
1
Empty outputs from dataprep
#32
matthew-valentine
closed
8 months ago
9
xpore/xpore/diffmod/model_kmer.csv
#31
pa6774ac-s
closed
8 months ago
2
results interpretation
#30
Huanle
closed
8 months ago
8
RNA sequence kit
#29
pabloacera
closed
8 months ago
1
weird struct.error when running xpore-diffmod
#28
pabloacera
closed
8 months ago
2
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