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GoekeLab
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xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
https://xpore.readthedocs.io/
MIT License
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dataprep high coverage sample
#162
rania-o
opened
1 year ago
6
diffmod running problem
#161
rezarahman12
closed
1 year ago
2
Request for xpore result of HEK293T-rep2
#160
kwonej0617
opened
1 year ago
20
eventalignment and bas fast5 file
#159
rezarahman12
closed
1 year ago
3
HEK293T data fast5 untar problem
#158
rezarahman12
closed
1 year ago
1
Diffmode demo problems
#157
tele-med
closed
8 months ago
3
xpore dataprep indexing error: PerformanceWarning: indexing past lexsort depth may impact performance.
#156
kwonej0617
closed
1 year ago
3
difference of eventalign files
#155
rezarahman12
opened
1 year ago
2
dRNA-Seq kit and FLO cell ID
#154
rezarahman12
closed
1 year ago
2
output table description
#153
zzf77
closed
1 year ago
3
dataprep control error
#152
rania-o
closed
1 year ago
0
Interpretation of results
#151
zzf77
opened
1 year ago
4
reference files inquiry
#150
sunsetyerin
closed
8 months ago
1
eventalign.txt file size
#149
sunsetyerin
closed
8 months ago
3
eventalign.txt.gz file as an input
#148
sunsetyerin
opened
2 years ago
1
run without KO sample
#147
xieyy46
opened
2 years ago
1
results of every transcriptomic position
#146
zhongzhd
closed
2 years ago
0
Position to coordinate
#144
ynren1020
closed
8 months ago
10
Regulate minimum coverage manually ?
#143
Peng-Lingwei
closed
8 months ago
1
Diffmod_error
#142
rania-o
closed
2 years ago
3
data problems data.json
#141
Tako-liu
closed
2 years ago
2
Dataprep error
#140
rania-o
closed
2 years ago
1
Unable to create group
#139
ynren1020
closed
8 months ago
1
Dataprep issue: empty data files
#138
acurry-hyde
closed
8 months ago
4
dataprep ERROR
#137
zzf77
closed
2 years ago
1
Clarification on "Output table description"
#134
nicolechaumont
closed
2 years ago
0
How to get absolute m6A number in each library?
#133
gaoyubang
closed
2 years ago
0
Time resource consumption problem of multi group pairwise comparison
#130
gaoyubang
closed
2 years ago
0
Can xpore be used for analysis Promethion direct rna sequence data
#129
gaoyubang
closed
2 years ago
0
Issue regarding the HEK293T data and preprocessed HEK293T data
#128
daewon-gong
closed
8 months ago
3
How can I get p values for all the positions?
#125
bhargava-morampalli
closed
8 months ago
2
Version number is wrong in bioconda 2.1 install
#124
james-vincent
closed
8 months ago
1
Issue running dataprep
#123
acarmas1
closed
8 months ago
15
KeyError: 'contig' when running xpore-dataprep
#122
vmurigneu
closed
2 years ago
3
Could I use HEK293T-KO samples as unmodified (m6A) controls for data from SQK-RNA002?
#120
mantonglaw
closed
2 years ago
0
--n_processes errors xpore diffmod
#119
callumparr
closed
2 years ago
4
Can xpore be used for analysis Promethion direct rna sequence data?
#118
gaoyubang
closed
2 years ago
1
Update __init.py__ to match 2.1
#115
matthewstuartedwards
closed
2 years ago
1
Are the initial data-prep steps now in line with m6anet?
#114
callumparr
closed
2 years ago
2
add functions for tombo outputs
#113
yuukiiwa
closed
7 months ago
0
Errors while running xpore dataprep
#110
JBerthelier
closed
8 months ago
7
ValueError: Expected object or value
#109
yuxinPenny
closed
8 months ago
2
Mixture of samples
#107
AminaLEM
closed
2 years ago
0
update readthedocs with --gtf_or_gff specifics
#105
yuukiiwa
closed
2 years ago
0
Fix quickstart doc
#103
hendrikweisser
closed
2 years ago
1
Results Interpretation xPore 2.0
#99
Wardale24
closed
2 years ago
0
add assert "NNNNN" for process_tx and solve bug with stringtie gtf
#96
yuukiiwa
closed
2 years ago
0
Feasibility of xpore to work on non-nanopore RNA-seq data
#94
ybfu88
closed
2 years ago
0
DIffmod error
#92
Wardale24
closed
2 years ago
7
Add GFF annotation option and change fasta and gtf input flags names
#90
yuukiiwa
closed
2 years ago
0
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