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GoogleCloudPlatform
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vertex-ai-alphafold-inference-pipeline
This repository compiles prescriptive guidance and code samples demonstrating how to operationalize AlphaFold batch inference using Vertex AI Pipelines.
Apache License 2.0
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fixed pipeline image build and notebook runtime errors
#69
trainormg
opened
2 days ago
0
Bump werkzeug from 2.3.8 to 3.0.6 in /src/backend
#68
dependabot[bot]
opened
2 weeks ago
0
Bump rollup from 3.29.1 to 3.29.5 in /src/frontend
#67
dependabot[bot]
opened
1 month ago
0
os env based parameters for the alphafold pipeline were not loaded after changing them in the notebook
#66
jmbrinkman
opened
1 month ago
0
Bump vite from 4.5.2 to 4.5.5 in /src/frontend
#65
dependabot[bot]
opened
1 month ago
0
Bump micromatch from 4.0.5 to 4.0.8 in /src/frontend
#64
dependabot[bot]
opened
2 months ago
0
Bump flask-cors from 4.0.0 to 5.0.0 in /src/backend
#63
dependabot[bot]
opened
2 months ago
0
Bump flask-cors from 4.0.0 to 4.0.1 in /src/backend
#62
dependabot[bot]
closed
2 months ago
1
Update frontend and backend with new A100 80GB and H100 80GB
#61
chmstimoteo
closed
4 months ago
0
Bump urllib3 from 1.26.18 to 1.26.19 in /src/backend
#60
dependabot[bot]
opened
4 months ago
0
Bump authlib from 1.2.1 to 1.3.1 in /src/backend
#59
dependabot[bot]
opened
5 months ago
0
Bump requests from 2.31.0 to 2.32.0 in /src/backend
#58
dependabot[bot]
opened
5 months ago
0
Bump jinja2 from 3.1.3 to 3.1.4 in /src/backend
#57
dependabot[bot]
opened
6 months ago
0
Bump werkzeug from 2.3.8 to 3.0.3 in /src/backend
#56
dependabot[bot]
closed
2 weeks ago
1
Configure Renovate
#55
renovate-bot
opened
6 months ago
0
Bump gunicorn from 20.1.0 to 22.0.0 in /src/backend
#54
dependabot[bot]
opened
7 months ago
0
Bump vite from 4.5.2 to 4.5.3 in /src/frontend
#53
dependabot[bot]
closed
1 month ago
1
update terraform module_name
#52
yudyhendry
closed
7 months ago
0
Bump follow-redirects from 1.15.5 to 1.15.6 in /src/frontend
#51
dependabot[bot]
closed
8 months ago
0
Fix broken folding
#50
yudyhendry
closed
8 months ago
0
fix container building issue
#49
JasperW01
closed
8 months ago
0
Container building failed due to dependency since early March 2024
#48
JasperW01
closed
4 months ago
2
Fix bug 1) prediction field uneditable 2) monomer autodetect failure 3) broken notebook runtime
#47
yudyhendry
closed
8 months ago
0
Bump jose from 4.14.6 to 4.15.5 in /src/frontend
#46
dependabot[bot]
closed
8 months ago
0
Bump flask from 2.1.0 to 2.2.5 in /src/backend
#45
dependabot[bot]
closed
8 months ago
0
Allow specifying Image URI for Alphafold components through environment variable
#44
sosoihd
opened
9 months ago
0
Vertex AI Pipelines Uses Default Project Compute ServiceAccount
#43
sosoihd
opened
9 months ago
1
Bump follow-redirects from 1.15.2 to 1.15.5 in /src/frontend
#42
dependabot[bot]
closed
8 months ago
1
Bump @babel/traverse from 7.22.17 to 7.23.9 in /src/frontend
#41
dependabot[bot]
closed
8 months ago
3
Bump postcss from 8.4.29 to 8.4.34 in /src/frontend
#40
dependabot[bot]
closed
8 months ago
1
Bump werkzeug from 2.3.7 to 2.3.8 in /src/backend
#39
dependabot[bot]
closed
8 months ago
1
Bump vite from 4.4.9 to 4.5.2 in /src/frontend
#38
dependabot[bot]
closed
8 months ago
1
Bump urllib3 from 1.26.16 to 1.26.18 in /src/backend
#37
dependabot[bot]
closed
8 months ago
1
Bump jinja2 from 3.1.2 to 3.1.3 in /src/backend
#36
dependabot[bot]
closed
8 months ago
1
Bump axios from 1.5.0 to 1.6.0 in /src/frontend
#35
dependabot[bot]
closed
8 months ago
1
upgrade to Kubeflow Pipelines V2 which was released in Oct 2023
#34
JasperW01
opened
1 year ago
0
UI Layer (Alphafold Portal)
#33
yudyhendry
closed
9 months ago
0
fix issue 29
#32
JasperW01
closed
1 year ago
0
Add the previous version of Dockerfile back for A100 & T4
#31
JasperW01
closed
1 year ago
1
Container Image with the New Dockerfile of PR28 causing failure in the Relax step with T4 and A100
#30
JasperW01
opened
1 year ago
1
Predict step for 1S78 failed with default setting of L4 + g2-standard-8
#29
JasperW01
closed
1 year ago
1
Changes to allow predicting/relaxing with NVIDIA L4 GPUs
#28
cjpooley
closed
1 year ago
9
Fix infrastructure deployment and quick-start notebook
#27
chmstimoteo
closed
1 year ago
1
Force install of KFP v1.8.22
#26
emc2cube
closed
1 year ago
1
align with AlphaFold v2.3.1
#25
JasperW01
closed
1 year ago
2
Move from Google Container Registry to Artifact Registry
#24
JasperW01
closed
1 year ago
1
Update metadata visualization
#23
leiterenato
closed
1 year ago
0
msa_uri is empty in No. 2 notebook
#22
JasperW01
closed
1 year ago
2
Relaxation step fails with the new version aligned with AlphaFold v2.3.0
#21
JasperW01
closed
1 year ago
2
[FEAT] - Add 'DATA_PIPELINE_MACHINE_TYPE' environ example to quick start notebook
#20
iojohnso
closed
1 year ago
2
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