GenomeMenu
JBrowse Plugin for grouped datasets.
In JBrowse config file:
{
"datasets": {
"group-wheat": { "name": "Wheat" },
"whe-iwgsc2018": {
"name": "Wheat Chinese Spring IWGSC RefSeq v1.0 genome assembly (2018)",
"url":"<<domain>>/jb?data=/ggds/whe-iwgsc2018",
},
"whe-svevo2018": {
"name": "Triticum turgidum Durum Wheat Svevo (RefSeq Rel. 1.0) (2019)",
"url":"<<domain>>/jb?data=/ggds/whe-svevo2018"
},
"whe-tauschii2017": {
"name": "Aegilops tauschii Aet v4.0 genome assembly (2017)",
"url":"<<domain>>/jb?data=/ggds/whe-tauschii2017"
},
"whe-zavitan2019": {
"name": "Wild Emmer Wheat Zavitan WEWSeq v2.0 genome assembly (2019)",
"url":"<<domain>>/jb?data=/ggds/whe-zavitan2019"
},
"whe-zavitan2017": {
"name": "Wild Emmer Wheat Zavitan WEWSeq v1.0 genome assembly (2017)",
"url":"<<domain>>/jb?data=/ggds/whe-zavitan2017"
},
"whe-pan2017": {
"name": "Wheat PanGenome (2017)",
"url":"<<domain>>/jb?data=/ggds/whe-pan2017"
},
"group-barley": { "name": "Barley" },
"bar-morex2018": {
"name": "Barley Morex IBSC genome assembly (2017)",
"url":"<<domain>>/jb?data=/ggds/bar-morex2018"
},
"bar-ensembl2016": {
"name": "Barley (2016) (Ensembl Release 31)",
"url":"<<domain>>/jb?data=/ggds/bar-ensembl2016"
},
"group-rye": { "name": "Rye" },
"rye-secale2017": {
"name": "Rye select Lo7 (2017)",
"url":"<<domain>>/jb?data=/ggds/rye-secale2017"
},
"group-oat": { "name": "Oat" },
"oat-avena2013": {
"name": "Hexaploid Oat (2013)",
"url":"<<domain>>/jb?data=/ggds/oat-avena2013"
}
}
} Plugin option overrideGenomeMenu to bypass genome menu link out to parent. (default false) This is for versions of jbrowse that do not support the "datasetLinkToParentIframe":true option.
Value is defined in the plugin config of jbrowse config:
"plugins": [
{
"name":"GenomeMenu",
"overrideGenomeMenu": true
}
]