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GreenleafLab
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ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
MIT License
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plotBrowserTrack inconsistent coverage profiles
#1555
Brawni
closed
2 years ago
8
Calling peaks with MACS2 segmentation fault error
#1552
allwright1
closed
2 years ago
2
getMarkerFeatures() doing differentials on samples not specified in useGroups or bgdGroups
#1551
stran94
closed
2 years ago
2
Error in eval(parse(text = genome)): object 'BSgenome.Mmusculus.UCSC.mm10' not found
#1548
yingyuan830
opened
2 years ago
8
error with GetMarkerFeatures after subsetting
#1547
yamihn
closed
2 years ago
6
error with AddGeneIntegrationMatrix
#1543
yamihn
closed
2 years ago
10
addGeneExpressionMatrix error: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘NSBS’ for signature ‘"list"’
#1541
SportyScientist
closed
2 years ago
3
Bug in add background peaksets summarized experiment?
#1540
jindalk
closed
2 years ago
2
Error in .requirePackage(genomeAnnotation$genome) :
#1539
Larrycpan
closed
2 years ago
2
GeneActivityScore region calculation for overlapping genes
#1535
bnprks
opened
2 years ago
2
[potential bug?] Can you justify why only human and mouse are supported by cisbp?
#1534
hukai916
closed
2 years ago
4
Weird clustering results
#1533
Larrycpan
closed
2 years ago
5
`getInputFiles()` cannot import `fragments.tsv.gz`
#1532
jiangpuxuan
closed
2 years ago
2
Harmony - downstream analysis not working
#1531
jshi7
closed
2 years ago
6
Dev match
#1529
rcorces
closed
2 years ago
0
plotEnrichHeatmap n parameter not working?
#1528
brianpenghe
closed
2 years ago
3
Error with creating ArrowFile
#1527
jshi7
closed
2 years ago
7
Output bam
#1519
Larrycpan
closed
2 years ago
2
Update dev with new features.
#1516
jeffmgranja
closed
2 years ago
0
tutorial: unable to get doublet scores
#1515
atkoriath
closed
2 years ago
2
addMotifAnnotations() requires taxid for JASPAR motifSet
#1513
hukai916
closed
2 years ago
5
OutputDirectory cannot have a space
#1505
nls88
closed
2 years ago
2
Saving subset of ArchRProject fails with all(file.exists(zfiles)) is not TRUE
#1504
boconnell89
closed
2 years ago
13
Dev jg 0701 Show Diffs
#1500
jeffmgranja
opened
2 years ago
1
Release 1.0.2
#1499
rcorces
closed
2 years ago
0
Subscript out of bounds error running addIterativeLSI
#1496
prmunn
closed
2 years ago
9
save macs2 fold enrichment signal value in summits
#1493
badoi
opened
2 years ago
5
Error : Error in (function (cl, name, valueClass) : 'history' is not a slot in class "SummarizedExperiment"\n
#1492
ChrisTzaferis
closed
2 years ago
6
Error with Arrow ArchRProj
#1491
rustycandlewick
closed
2 years ago
8
Eorror with addIterativeLSI
#1485
MatsuSui
closed
2 years ago
2
Error in system2(path, "callpeak -h", stdout = TRUE, stderr = TRUE)
#1483
sylestiel
closed
2 years ago
7
plotMarkers error
#1482
meowll
closed
2 years ago
2
getMarkerFeatures() normalization methods do not work except for "none" and "NULL"
#1480
YutingPKU
closed
2 years ago
2
Custom create motifannotaions error
#1476
yangxueqianR
closed
2 years ago
4
Remove peak coordinates in markerHeatmap
#1472
yuanlizhanshi
closed
2 years ago
2
getMarkerFeatures() all groups vs specific group
#1467
rcorces
closed
2 years ago
3
Dev guides
#1466
rcorces
closed
2 years ago
0
Dev subset se
#1465
rcorces
closed
2 years ago
0
plotFootprints: ArchRProj can't be NULL
#1461
hukai916
closed
2 years ago
7
Dev better download
#1453
rcorces
closed
2 years ago
0
Issue with plotEmbedding with GeneExpressionMatrix
#1452
jmmuncie
closed
2 years ago
9
Can't createArrowFiles on tutorial example
#1447
nchernia
closed
2 years ago
13
Failed to create ArrowFiles. simpleError in doTryCatch(return(expr)
#1446
sunjiahe-hub
closed
2 years ago
1
add namespace of `resize`
#1444
xuzhougeng
closed
2 years ago
1
addGeneIntegrationMatrix error using seurat object
#1443
plbngl
closed
2 years ago
6
PlotMarkerHeatmap Log2norm error with subsetted se object
#1442
evaham1
closed
2 years ago
5
Error with `import10xFeatureMatrix` when reading 6 files: rownames (genes) of individual RNA objects are not equivalent
#1440
raquel-bc
closed
2 years ago
34
addDoubletScores() - Cannot saveRDS because directory does not exist
#1436
danyama312
closed
2 years ago
2
Unable to create Arrow Files (including from tutorial data)
#1435
ew367
closed
2 years ago
18
remove strictMatch from batchlapply
#1434
rcorces
closed
2 years ago
0
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