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GreenleafLab
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MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
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Cell barcode IDs for processed ATAC SummarizedExperiment objects
#28
andrewjkwok
opened
2 years ago
0
scRNA cell type annotation marker
#27
dhoneyi
opened
2 years ago
1
Label transfer from RNA to ATAC
#26
RegnerM2015
opened
3 years ago
0
Antibody features in raw 10x Bam Files provided in the repository link
#25
GAgafencu
opened
3 years ago
0
Cannot find the definition of the function "keepFilteredChromosomes"
#24
YangLi-Bio
opened
3 years ago
0
Error in lsiProjection
#23
pbrazda
opened
4 years ago
0
nn_index in scRNA-Projection-UMAP.zip is empty or not compatible with uwot 0.1.8 and RcppAnnoy 0.0.16
#22
wangmeijiao
opened
4 years ago
1
About the reference genome used in scRNA
#21
hahia
opened
4 years ago
0
Minor fixes on lines 15, 37
#20
kant
opened
4 years ago
0
LASSO penalty issue in customized gene activity score calculation
#19
wangmeijiao
opened
4 years ago
0
Runtime of getting UMAP reductions
#18
mohit1997
opened
4 years ago
4
CLR assay missing in scADT-All-Hematopoiesis-MPAL-191120.rds
#17
rargelaguet
opened
4 years ago
1
'keepFilteredChromosomes' function seems invalid
#16
wangmeijiao
closed
4 years ago
2
How did you compose those pretty scentific figures ?
#15
wangmeijiao
opened
4 years ago
4
Where is the bam file for scATAC-seq data?
#14
eravza
opened
4 years ago
6
sparseMatTTest function is not defined in the scATAC_05_Cluster_Disease_w_Reference_v1.R ?
#13
CSBioAzim
closed
4 years ago
1
Where is the genes.gtf file
#12
yejg2017
closed
4 years ago
1
Code for creating differentiual_Summary objects is missing
#11
CSBioAzim
opened
4 years ago
1
optimizeLSI for scRNA-seq gives Error in if (n < 0L) max(length(x) + n, 0L) else min(n, length(x)) :
#10
CSBioAzim
opened
4 years ago
0
Minor proposal on paragraph 13
#9
kant
closed
4 years ago
1
error in 02.R...
#8
hjack123
closed
4 years ago
3
is there a way to combine different 10x results ie different fragment.tsv.gz? thanks!
#7
hjack123
closed
4 years ago
2
AML cells LSI projection and reclassification
#6
eldadshulman
opened
4 years ago
2
Seurat v3
#5
edward130603
closed
4 years ago
2
No seuratSNN function?
#4
ericli0419
closed
4 years ago
1
Download link does not match with the description
#3
ptdtan
closed
4 years ago
1
Jg
#2
jgranja24
closed
4 years ago
1
scATAC peak file
#1
mvinyard
closed
4 years ago
2