GreenleafLab MPAL-Single-Cell-2019 issues

GreenleafLab / MPAL-Single-Cell-2019

Publication Page for MPAL Paper 2019

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issues

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Cell barcode IDs for processed ATAC SummarizedExperiment objects

#28 andrewjkwok opened 2 years ago
0
scRNA cell type annotation marker

#27 dhoneyi opened 2 years ago
1
Label transfer from RNA to ATAC

#26 RegnerM2015 opened 3 years ago
0
Antibody features in raw 10x Bam Files provided in the repository link

#25 GAgafencu opened 3 years ago
0
Cannot find the definition of the function "keepFilteredChromosomes"

#24 YangLi-Bio opened 3 years ago
0
Error in lsiProjection

#23 pbrazda opened 4 years ago
0
nn_index in scRNA-Projection-UMAP.zip is empty or not compatible with uwot 0.1.8 and RcppAnnoy 0.0.16

#22 wangmeijiao opened 4 years ago
1
About the reference genome used in scRNA

#21 hahia opened 4 years ago
0
Minor fixes on lines 15, 37

#20 kant opened 4 years ago
0
LASSO penalty issue in customized gene activity score calculation

#19 wangmeijiao opened 4 years ago
0
Runtime of getting UMAP reductions

#18 mohit1997 opened 4 years ago
4
CLR assay missing in scADT-All-Hematopoiesis-MPAL-191120.rds

#17 rargelaguet opened 4 years ago
1
'keepFilteredChromosomes' function seems invalid

#16 wangmeijiao closed 4 years ago
2
How did you compose those pretty scentific figures ?

#15 wangmeijiao opened 4 years ago
4
Where is the bam file for scATAC-seq data?

#14 eravza opened 4 years ago
6
sparseMatTTest function is not defined in the scATAC_05_Cluster_Disease_w_Reference_v1.R ?

#13 CSBioAzim closed 4 years ago
1
Where is the genes.gtf file

#12 yejg2017 closed 4 years ago
1
Code for creating differentiual_Summary objects is missing

#11 CSBioAzim opened 4 years ago
1
optimizeLSI for scRNA-seq gives Error in if (n < 0L) max(length(x) + n, 0L) else min(n, length(x)) :

#10 CSBioAzim opened 4 years ago
0
Minor proposal on paragraph 13

#9 kant closed 4 years ago
1
error in 02.R...

#8 hjack123 closed 4 years ago
3
is there a way to combine different 10x results ie different fragment.tsv.gz? thanks!

#7 hjack123 closed 4 years ago
2
AML cells LSI projection and reclassification

#6 eldadshulman opened 4 years ago
2
Seurat v3

#5 edward130603 closed 4 years ago
2
No seuratSNN function?

#4 ericli0419 closed 4 years ago
1
Download link does not match with the description

#3 ptdtan closed 4 years ago
1
Jg

#2 jgranja24 closed 4 years ago
1
scATAC peak file

#1 mvinyard closed 4 years ago
2