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GrindeLab / STEAM

Significance Threshold Estimation for Admixture Mapping, an R package.
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R version? #2

Closed njbowen closed 4 years ago

njbowen commented 4 years ago

got this error, should I use higher or lower version? thanks.

library(devtools) Loading required package: usethis install_github("kegrinde/STEAM") Downloading GitHub repo kegrinde/STEAM@master Skipping 3 packages not available: gdsfmt, SNPRelate, SeqArray Installing 4 packages: bootstrap, gdsfmt, SNPRelate, SeqArray Installing packages into ‘/usr/local/lib/R/3.6/site-library’ (as ‘lib’ is unspecified) Error: Failed to install 'STEAM' from GitHub: (converted from warning) packages ‘gdsfmt’, ‘SNPRelate’, ‘SeqArray’ are not available (for R version 3.6.1)

kegrinde commented 4 years ago

try installing the latest versions of the gdsfmt, SNPRelate, and SeqArray packages from Bioconductor:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gdsfmt")
BiocManager::install("SNPRelate")
BiocManager::install("SeqArray")