Running segmentation_to_meshs.py in parallel modify output file names with first processed labels file

GrotjahnLab / surface_morphometrics

Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.

GNU General Public License v3.0

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Running segmentation_to_meshs.py in parallel modify output file names with first processed labels file #21

Open mmedina300 opened 9 months ago

mmedina300 commented 9 months ago

When running [python segmentation_to_meshes.py config.yml ] the output written files .ply, .surface.vtp, .xyz files are all modified with and ending from the first processed labels file. (Example output file names: _OMM.labels_OMM.surface.vtp and _IMM.labels_OMM.surface.vtp.) This causes an error for following steps because of the modified ending which no longer matches the original .labels.mrc file

bbarad commented 2 months ago

Is this still happening? Can you provide a dataset that reproduces this bug so I can dig in?