Can the bam output result of bismark2 be directly used in BatMeth2?

GuoliangLi-HZAU / BatMeth2

BS-seq analysis pipeline

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Can the bam output result of bismark2 be directly used in BatMeth2? #25

Open akui113 opened 2 years ago

akui113 commented 2 years ago

Dear Prof. Li Very good software！ I have a question, because the data we used to analyze WGBS is relatively large, and there are many samples, the sequence alignment process takes more time, so we want to know whether the bam file output by bismark2 can be directly used in BatMeth2?

Thank you for your generous help! Best!

ZhouQiangwei commented 2 years ago

sure, bam file can be used in batmeth2 (calmeth, calculate DNA methylation level)

akui113 commented 2 years ago

@ZhouQiangwei wow! yes! Thank you for your generous help!