/opt/BatMeth2/bin/batmeth2-align: not found

GuoliangLi-HZAU / BatMeth2

BS-seq analysis pipeline

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/opt/BatMeth2/bin/batmeth2-align: not found #32

Open chgyi opened 2 years ago

chgyi commented 2 years ago

root@45221d1c9fab:/opt/BatMeth2/bin# ./BatMeth2 align [MM] /opt/BatMeth2/bin/batmeth2-align sh: 1: /opt/BatMeth2/bin/batmeth2-align: not found

BatMeth2 downloaded in 2022-05-09

ZhouQiangwei commented 2 years ago

Hi,

We have removed batmeth2-align script in new version of bt2. but we forgot to change the help parameter in main script. you can just run BatMeth2 align -g /data/index/genome/genome.fa -1 Read_R1_left.fq.gz -2 Read_R2_right.fq.gz -o outPrefix -p 10. and here is the usage detail of batmeth2. https://batmeth2-mbw.readthedocs.io/en/latest/function/Alignment.html

we have just fixed this, you also can download the new version, sorry for this bug in bt2.