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GuoliangLi-HZAU / BatMeth2

BS-seq analysis pipeline
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problem during installation #9

Open drkalpanasingh opened 5 years ago

drkalpanasingh commented 5 years ago

kindly help me solve with issue.Thanks

pkgupta@pkgupta:~/Downloads/bisulfite/BatMeth2-master$ make

make[2]: Leaving directory '/Downloads/bisulfite/BatMeth2-master/src' Making all in scripts make[2]: Entering directory '/Downloads/bisulfite/BatMeth2-master/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/Downloads/bisulfite/BatMeth2-master/scripts' Making all in src/batDMR make[2]: Entering directory '/Downloads/bisulfite/BatMeth2-master/src/batDMR' g++ -Wall -fmessage-length=50 -c -o regression.o regression.cpp -I/Downloads/bisulfite/BatMeth2-master/src/batDMR -I./ -lgsl -lgslcblas -lm g++ -Wall -fmessage-length=50 -c -o combine_pvals.o combine_pvals.cpp -I/Downloads/bisulfite/BatMeth2-master/src/batDMR -I./ -lgsl -lgslcblas -lm combine_pvals.cpp: In member function ‘double DistanceCorrelation::correlation(const std::vector&, const std::vector&)’: combine_pvals.cpp:195:16: error: ‘gsl_stats_correlation’ was not declared in this scope double corr= gsl_stats_correlation ( gsl_x.vector.data, stride,gsl_y.vector.dat a, stride,x.size()); ^~~~~

combine_pvals.cpp:195:16: note: suggested alternative: ‘gsl_stats_char_min’ double corr= gsl_stats_correlation ( gsl_x.vector.data, stride,gsl_y.vector.dat a, stride,x.size()); ^~~~~

            gsl_stats_char_min

make[2]: [Makefile:74: combine_pvals.o] Error 1 make[2]: Leaving directory '/Downloads/bisulfite/BatMeth2-master/src/batDMR' make[1]: [Makefile:257: all-recursive] Error 1 make[1]: Leaving directory '/Downloads/bisulfite/BatMeth2-master' make: *** [Makefile:193: all] Error 2

GuoliangLi-HZAU commented 4 years ago

Hi, Could you please check whether install GSL correctly?