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HIT-ImmunologyLab / DBSCAN-SWA

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Issue with dbscan-swa.py script #3

Closed traneric closed 3 years ago

traneric commented 3 years ago

I'm trying to run the software using the test files and I keep getting this error:

File "dbscan-swa.py", line 2773, in <module> predict_prophage(strain_id,inputfile_bac,outdir,add_annotation,prefix) File "dbscan-swa.py", line 2514, in predict_prophage predict_prophage_dbscan_swa(strain_id,bac_fna_file,bac_protein_file,dbscan_region_file,swa_region_file,bac_protein_annotation_file,prophage_outdir,prefix) File "dbscan-swa.py", line 1493, in predict_prophage_dbscan_swa region_pro_sequence_list,prophage_pro_num = get_protein_to_position_genbank(bac_faa_file,inf['place'],inf['end'],region_faa_file,'DBSCAN-SWA') TypeError: get_protein_to_position_genbank() missing 1 required positional argument: 'strain_id'

Any ideas what's happening here?

HIT-ImmunologyLab commented 3 years ago

I am very sorry for the error. Now the script has been corrected, you can download the script "dbscan-swa.py" again, the issue can be solved

HIT-ImmunologyLab commented 3 years ago

I'm trying to run the software using the test files and I keep getting this error:

File "dbscan-swa.py", line 2773, in <module> predict_prophage(strain_id,inputfile_bac,outdir,add_annotation,prefix) File "dbscan-swa.py", line 2514, in predict_prophage predict_prophage_dbscan_swa(strain_id,bac_fna_file,bac_protein_file,dbscan_region_file,swa_region_file,bac_protein_annotation_file,prophage_outdir,prefix) File "dbscan-swa.py", line 1493, in predict_prophage_dbscan_swa region_pro_sequence_list,prophage_pro_num = get_protein_to_position_genbank(bac_faa_file,inf['place'],inf['end'],region_faa_file,'DBSCAN-SWA') TypeError: get_protein_to_position_genbank() missing 1 required positional argument: 'strain_id'

Any ideas what's happening here?

I am very sorry for the error. Now the script has been corrected, you can download the script "dbscan-swa.py" again, the issue can be solved

traneric commented 3 years ago

Thank you the script works now