Open dineshkumarsrk opened 3 years ago
@dineshkumarsrk I am sorry for the error. I have corrected the error in dbscan-swa.py and you could re-download the dbscan-swa.py. If you have any problem, welcome comment.
Thank you @HIT-ImmunologyLab . PATH variable issue has resolved now. But, now I am getting another error as follows,
ga@ga214:~$ python3 ~/Documents/tools/prophage_DBSCAN-SWA/bin/dbscan-swa.py --input ~/Documents/tools/prophage_DBSCAN-SWA/test/NC_007054.gb --output dinesh --prefix din
Warning:The parameter add_annotation default:PGPD,If you want to run fast, please set add_annotation to none
You are running DBSCAN-SWA first time, the database will be downloaded in /home/ga/Documents/tools/prophage_DBSCAN-SWA/db
--2021-03-01 14:55:30-- http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz
Resolving www.microbiome-bigdata.com (www.microbiome-bigdata.com)... 113.6.251.9
Connecting to www.microbiome-bigdata.com (www.microbiome-bigdata.com)|113.6.251.9|:80... failed: Connection timed out.
Retrying.
--2021-03-01 14:57:42-- (try: 2) http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz
Connecting to www.microbiome-bigdata.com (www.microbiome-bigdata.com)|113.6.251.9|:80... failed: Connection timed out.
Retrying.
--2021-03-01 14:59:54-- (try: 3) http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz
Connecting to www.microbiome-bigdata.com (www.microbiome-bigdata.com)|113.6.251.9|:80... failed: Connection timed out.
Retrying.
--2021-03-01 15:02:08-- (try: 4) http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz
Connecting to www.microbiome-bigdata.com (www.microbiome-bigdata.com)|113.6.251.9|:80...
Even, I tried to open your site http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz on my google chrome but could not connect it. your site is having some issue.
@dineshkumarsrk The website is correct(http://www.microbiome-bigdata.com/PHISDetector/static/download/DBSCAN-SWA/db.tar.gz). You can use other tool like axel. Alternatively, you could download the database manually from http://www.microbiome-bigdata.com/PHISDetector/index/download
I have followed all the instruction mentioned in your
readme
installed all the necessary dependencies and added the DBSCAN_SWA in my.bashrc
and also added in terminal also usingexport
option but still I am getting error as shown below,my
.bashrc
file is shown belowPlease help me to fix this issue.