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HUPO-PSI
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mzTab
mzTab Reporting MS-based Proteomics and Metabolomics Results
https://hupo-psi.github.io/mzTab
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Various updates to spec doc
#124
andrewrobertjones
closed
6 years ago
2
Updates to README.md to reflect updated document locations etc.
#123
nilshoffmann
closed
6 years ago
0
Fix broken links in README.md
#122
nilshoffmann
closed
6 years ago
1
Adding HMDB ID and URL
#121
sneumann
closed
6 years ago
0
Add examples for molecule / feature quantification
#120
sneumann
closed
6 years ago
0
Add cvTerms for median and coeff of variance
#119
sneumann
closed
6 years ago
2
study_variable[1-n]_average_function and study_variable[1-n]_variation_function
#118
sneumann
closed
6 years ago
1
assay[1-n]-external_uri Example for MetaboLights
#117
sneumann
closed
6 years ago
1
Updates to spec doc
#116
andrewrobertjones
closed
6 years ago
0
[FIX] SME_ID/REFS example; Regex adduct ion
#115
oliveralka
closed
6 years ago
0
Allow Travis access
#114
nilshoffmann
closed
6 years ago
4
Minor text change
#113
andrewrobertjones
closed
6 years ago
0
Fix issues in MTBLS263 example
#112
kayrein
closed
6 years ago
0
Changes in mzTab-P to be more compatible with mzTab-M
#111
ypriverol
closed
6 years ago
0
Question: Application of non unique evidence_ID (with multiple ids/adducts)
#110
oliveralka
closed
5 months ago
5
wtab experiment from Metabolomics Workbench
#109
ypriverol
opened
6 years ago
4
CV Terms for mzTab-m 2.0.0
#108
nilshoffmann
closed
5 years ago
11
Minor changes in the structure for Metabolomics / Proteomics separation
#107
ypriverol
closed
6 years ago
0
minor changes in the structure of the folders
#106
ypriverol
closed
6 years ago
0
In the line 45. MTBLS263 should be CV param
#105
rsalek
closed
6 years ago
2
Add example for ND database
#104
nilshoffmann
closed
6 years ago
3
Order of elements in spec doc should resemble expected order in mzTab file
#103
nilshoffmann
closed
5 years ago
2
Capture mzTab flavour in the metadata section
#102
nilshoffmann
closed
6 years ago
3
Important questoin: How to link to evidence without feature?
#101
timosachsenberg
closed
6 years ago
2
Question: 6.3.10. exp_mass_to_charge
#100
timosachsenberg
closed
6 years ago
3
question: log data an Coff. V.
#99
timosachsenberg
closed
6 years ago
3
ichi column examples list InchieKey
#98
timosachsenberg
closed
6 years ago
4
6.2.25. study_variable_function[1-n] wrong example
#97
timosachsenberg
closed
6 years ago
2
Optional metadata CV Term for custom retention time calculation
#96
nilshoffmann
opened
6 years ago
0
Reporting of mixed adduct evidence / features and summary entries
#95
nilshoffmann
closed
6 years ago
3
Define a default identifier for study variable if software does not provide study variable information.
#94
nilshoffmann
closed
6 years ago
1
Update mzTab_format_specification_1_1-M_draft.adoc
#93
timosachsenberg
closed
6 years ago
0
small typo in example
#92
timosachsenberg
closed
6 years ago
0
evidence_unique_ID clarify how "fragment spectrum, RT and m/z pair, isotope profile" is used
#91
timosachsenberg
closed
6 years ago
1
Reporting of isotopomers
#90
timosachsenberg
opened
6 years ago
3
CRITICAL: link to quantification channel
#89
timosachsenberg
closed
6 years ago
2
added fraction id meta value
#88
timosachsenberg
closed
4 years ago
2
small_molecule-identification_reliability
#87
timosachsenberg
closed
6 years ago
1
smale_molecule-quantification_unit
#86
timosachsenberg
closed
6 years ago
2
cv[1-n]-label example should be extended
#85
timosachsenberg
closed
6 years ago
1
MzTab-M: mzTab-ID is mandatory. Example is missing that indicates how the string can/should be choosen.
#84
timosachsenberg
closed
6 years ago
3
Remove all occurances where retention time unit is set to minutes
#83
timosachsenberg
closed
6 years ago
3
remove space from column name
#82
timosachsenberg
closed
6 years ago
0
sample_processing needs update to metabolomics
#81
timosachsenberg
closed
6 years ago
2
quantificiation_method need update to metabolomics
#80
timosachsenberg
closed
6 years ago
3
fixed c&p error in example
#79
timosachsenberg
closed
6 years ago
0
Example in charge column: add for negative polarity
#78
timosachsenberg
closed
6 years ago
9
example: minor edit to suggest that sub second RT should be specified
#77
timosachsenberg
closed
6 years ago
0
converted Ambiguity_code to lower case
#76
timosachsenberg
closed
6 years ago
0
question: SME_ID_REF_Ambiguity_code
#75
timosachsenberg
closed
6 years ago
1
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