This velocity analysis package provides functions for velocity analyis from single-cell RNA data. We introduce two methods, along with revised processing and visualisation functions.
The tools in this package are compatible with scanpy.
To install the package from GitHub, please use:
git clone https://github.com/HaghverdiLab/velocity_package
cd velocity_package
pip install -e .
Tutorials explaining the RNA analysis workflow with $\kappa$-velo and eco-velo can be found here.
Valérie Marot-Lassauzaie, Brigitte Joanne Bouman, et al. Towards reliable quantification of cell state velocities bioRxiv (2022)
If you found a bug, would like to see a feature implemented, or have a question please open an issue.