'Meas Value' Domain - Map Concepts to

Health-Informatics-UoN / Carrot-Mapper

Carrot: Convenient And Reusable Rapid Omop Transformer.

https://carrot4omop.ac.uk

MIT License

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'Meas Value' Domain - Map Concepts to #769

Open DrUrwin opened 4 days ago

DrUrwin commented 4 days ago

Is there an existing issue for this?

[X] I have searched the existing issues

Is your proposal related to a problem or functionality gap?

Rachel Sippy at Cambridge would like to be able to map concepts to the 'Meas Value' domain within Carrot - It is current impossible to do so.

Describe your proposal

Understand what needs to be expanded within Carrot to support mapping to the 'Meas Domain'

Describe alternatives you've considered

No response

I'm part of a Project Team

Esmond Urwin

Anything else?

No response

Are you willing to contribute to developing this feature?

✅ Yes, me or my team intend to do the development.

AndyRae commented 4 days ago

Examples would be helpful for us to understand this more effectively @DrUrwin

erummas commented 3 days ago

This should merge with the value_as_concept_id feature request.

DrUrwin commented 2 days ago

I have an email reply regarding examples for the 'Meas Value' domain:

"Here is a table of some examples of the original field and the concept. In the table, there are two source fields that are represented by two OMOP concepts: "Family history of psychiatric disorders" and "Low serum vitamin D".

Source Data	OMOP Concept Name	OMOP Concept ID
Caregiver(s) currently provide assistance	Caregiver(s) currently provide assistance	45880410
Thyroid disease	Thyroid disease	45879468
Family history of psychiatric disorders	Psychiatric disorder	36308213
Family history of psychiatric disorders	Family history of clinical finding	4167217
Low serum vitamin D	Serum vitamin D measurement	4152982
Low serum vitamin D	Below threshold level	4129640