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HealthML
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active-segmentation
ActiveSegmentation: A Simulation Framework for Benchmarking Active Learning Strategies for 3D Medical Image Segmentation
GNU Affero General Public License v3.0
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Fix Sensitivity NaN
#110
jonaskordt
closed
2 years ago
0
Implement label_items method in DataModule classes
#109
Ijusttyped
closed
2 years ago
0
Discuss project folder structure
#108
Ijusttyped
closed
2 years ago
0
Implement loss functions
#107
Ijusttyped
closed
2 years ago
0
Integrate CI Pipeline for linting
#106
Ijusttyped
closed
2 years ago
0
Implement logging of dice score for interpolated slices
#105
Ijusttyped
closed
2 years ago
0
Hotfix to remove duplicates in random sampling
#104
Ijusttyped
closed
2 years ago
0
implement query strategy that combines representativeness and uncertainty sampling
#103
josafatburmeister
closed
2 years ago
0
Cluster-based representativeness sampling
#102
josafatburmeister
closed
2 years ago
0
Improve reproducibility
#101
josafatburmeister
closed
2 years ago
0
Fix epoch logging
#100
josafatburmeister
closed
2 years ago
0
Log dataset sizes to Weights and Biases
#99
josafatburmeister
closed
2 years ago
0
Adapt random sampling strategy to perform fully random sampling
#98
josafatburmeister
closed
2 years ago
0
Randomly select slices from all scans in random sampling strategy
#97
josafatburmeister
closed
2 years ago
0
Run active learning until everything is labeled
#96
josafatburmeister
closed
2 years ago
0
Fix size computation and distribution across workers for BCSS dataset
#95
josafatburmeister
opened
2 years ago
0
Fix batching in random sampling strategy
#94
josafatburmeister
closed
2 years ago
0
Interpolation Query Strategy
#93
jonaskordt
closed
2 years ago
0
Fix training loop
#92
josafatburmeister
closed
2 years ago
0
Disable deterministic mode
#91
josafatburmeister
closed
2 years ago
0
Add dropout layer to U-net architecture
#90
josafatburmeister
closed
2 years ago
0
Representativeness sampling
#89
josafatburmeister
closed
2 years ago
0
Delete PascalVOC dataset
#88
josafatburmeister
closed
2 years ago
0
Delete Pascal VOC dataset
#87
josafatburmeister
closed
2 years ago
0
Tests and improvements for uncertainty sampling
#86
Ijusttyped
closed
2 years ago
0
Refactor Nifti data set
#85
jonaskordt
closed
2 years ago
0
Fix inferencing
#84
jonaskordt
closed
2 years ago
0
Improve metric logging to WandB
#83
josafatburmeister
closed
2 years ago
0
Search for possible conferences to submit to
#82
JohannesHa
closed
2 years ago
0
Option to run Active Learning until whole dataset is labeled
#81
Jasperhino
closed
2 years ago
0
W&B Logging
#80
jonaskordt
closed
2 years ago
0
Feature/uncertainty sampling improvements
#79
JohannesHa
closed
2 years ago
0
Add smoothing to cross entropy loss
#78
josafatburmeister
closed
2 years ago
0
add smoothing to cross-entropy loss
#77
josafatburmeister
closed
2 years ago
0
Test attribute passing in combined per image metric
#76
josafatburmeister
closed
2 years ago
0
Test losses for 3d
#75
josafatburmeister
closed
2 years ago
0
Implementing newly added abstract methods
#74
Ijusttyped
closed
2 years ago
0
HeatMap Generation
#73
Ijusttyped
closed
2 years ago
0
Fix loading model from checkpoints
#72
Jasperhino
closed
2 years ago
0
Fix checkpoint loading
#71
Jasperhino
closed
2 years ago
0
Implement Cost-Effective Active Learning
#70
Jasperhino
closed
2 years ago
0
Implement Representativeness Query Strategy
#69
Jasperhino
closed
2 years ago
0
Heatmap for Uncertainty
#68
Jasperhino
closed
2 years ago
0
Sort slices in Hausdorff distance
#67
josafatburmeister
closed
2 years ago
0
Implement normalised surface distance
#66
josafatburmeister
opened
2 years ago
0
ensure that Hausdorff distance is only computed on sorted slices
#65
josafatburmeister
closed
2 years ago
0
Hausdorff distance for multi class case.
#64
josafatburmeister
closed
2 years ago
0
Uncertainty Sampling
#63
Jasperhino
closed
2 years ago
0
Add conda environment.yml
#62
Jasperhino
closed
2 years ago
0
Add logging models as wandb artifacts
#61
Jasperhino
closed
2 years ago
0
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