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HectorRDB
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condiments
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
https://hectorrdb.github.io/condiments/
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patternTest on separate fitGAM objects
#34
Alexis-Varin
opened
2 weeks ago
4
Large difference in two computations of fateSelectionTest()
#33
Alexis-Varin
closed
3 weeks ago
2
Discussion: When two trajectories are needed
#32
MartaSanchezCarbonell
opened
1 month ago
1
Following vignette, no condimentsPaper package
#31
chungsai
closed
4 months ago
2
Provide reordered counts matrix after "condiments::slingshot_conditions" for TradeSeq "fitGAM"
#30
Jaimelan
closed
4 weeks ago
4
Doubts regarding differential gene expression analysis
#29
Jaimelan
closed
5 months ago
0
Performing test between two conditions in an object than contains more
#28
Yanst86
closed
5 months ago
2
Theory Basis of Differential Progression
#27
GilbertHan1011
closed
5 months ago
4
trying to understand the outputs of fateSelectionTest() vs differentiationTest()
#26
klai001
closed
5 months ago
4
Using condiments on ctrl treatment data from two time points
#25
Rohit-Satyam
closed
7 months ago
2
Error with conditionTest
#24
jordiabante
closed
7 months ago
2
imbalance_score for more than 2 dimensions
#23
nickhir
closed
9 months ago
1
conditionTest log2FC
#22
flde
closed
9 months ago
2
unable to install Ecume
#21
zara03
closed
7 months ago
2
error for running 'imbalance_score' function
#20
dahun73
closed
7 months ago
6
Question on tutorial "Analysis of the fibrosis datataset"
#19
france-hub
closed
1 year ago
2
condiments Package
#18
Nab14
closed
10 months ago
10
starting from Seurat object or sce
#17
econnolly7
closed
1 year ago
1
topologyTest() returns an error when running Classifier test
#16
cgoneill
opened
2 years ago
10
Questions about the lineage curves: colors & extracting
#15
SimoniMD
closed
1 year ago
4
Error: For now this only works downstream of slingshot
#14
RicardoMartins-Ferreira
closed
2 years ago
2
Compatibility with replicates?
#13
cohenp05
closed
2 years ago
2
Run clusterExpressionPatterns based on conditions?
#12
ghost
closed
2 years ago
3
fitGAM run time
#11
Sa753
closed
2 years ago
2
Out put of the topology test for multiple comparisons
#10
ghost
closed
2 years ago
3
How to handle cells that belong to multiple overlapping lineages
#9
jeremymsimon
closed
2 years ago
2
fitGAM issue
#8
kunUCSD
closed
2 years ago
4
assigning a lineage
#7
cristanchoa
closed
2 years ago
2
problem when installing condiments
#6
liuweihanty
closed
2 years ago
4
not enough 'y' data when running KS-mean test in topologyTest() function
#5
PeggySze
closed
2 years ago
4
topology test question
#4
lb15
closed
2 years ago
2
Trajectory inference multiple conditions
#3
dhivyaa-6
closed
2 years ago
2
example("differentiationTest") => Error: there is no package called ‘DelayedMatrixStats’
#2
HenrikBengtsson
closed
3 years ago
3
Compilation issue from wsl2
#1
kmshort
closed
3 years ago
3