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HelenaLC
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CATALYST
Cytometry dATa anALYsis Tools
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plotAbundances plotting only one level of a metadata column
#301
matoriab
closed
8 months ago
5
Is there a way to export the raw frequency data?
#300
JingAnyaSun
closed
2 years ago
1
In prepData.R which function is used for arcsinh transformation?
#299
rohitfarmer
closed
2 years ago
5
Downsampling SCE for plotClusterExprs()
#298
david-priest
closed
2 years ago
3
Reading in Ctytoff data with Prepdata in CATALYST package
#297
Ind2022
closed
2 years ago
3
Question about prepData with transform = FALSE
#296
david-priest
closed
2 years ago
4
Here's some code for filtering sce by number of events and updating metadata in existing sce.
#295
david-priest
closed
2 years ago
1
Change channel names in sce
#294
david-priest
closed
2 years ago
3
Using CATALYST without sample barcodes
#293
suginoka
closed
1 year ago
1
diffcyt differential expression model with patient_id as random effect only returns NA p values
#292
singlecellfan
closed
2 years ago
1
CyTOF preprocessing issue_gating on live cells
#291
Sanirban
closed
2 years ago
0
Using Catalyst functions without cluster_codes
#290
singlecellfan
closed
2 years ago
1
Error in GetChannels(fsom, colsToUse) :
#289
Adoale
closed
1 year ago
13
plotPbExprs - statistical analysis
#288
rebecca1a
closed
2 years ago
2
Annotate on the UMAP instead of just in the legend
#287
FRLab
closed
2 years ago
2
define cofactor in prepdata for each antigen
#286
RebeccaPPayne
closed
1 year ago
2
plotDiffHeatmap - by condition?
#285
cr2106
closed
2 years ago
2
plotClusterExprs - X Axis and By Condition
#284
ramziabb
closed
2 years ago
3
scater runDiffusionMap deprecated
#283
TarikExner
closed
1 year ago
3
Dot plot of the cells coloured by cluster
#282
fycamu
closed
2 years ago
2
spillover matrix error - Error in .check_sm(sm, isotope_list) :
#281
MayaCyTOFnewbie
opened
2 years ago
2
Question about select specific # of events
#280
Rhodnius
closed
2 years ago
2
daFrame function not found
#279
fycamu
closed
2 years ago
4
Is it possible for prepData to take intensity data in data.frame/matrix and metadata
#278
lengfei5
closed
2 years ago
5
Code to get value of cell abundance without plot
#277
YukawaS
closed
2 years ago
1
Change point size in tSNE plotDR?
#276
tessbrodie
closed
2 years ago
5
plotDiffHeatmap - Remove Sample Names?
#275
ramziabb
closed
2 years ago
2
Channel to wrong location
#274
AlexStewart25
closed
2 years ago
2
prepData cannot read in fcs file is an empty value in header
#273
jillbo1000
closed
2 years ago
4
Large data / RAM issue
#272
LogIN-
closed
2 months ago
4
utils-compensation.R: updates for CD45 barcodes.
#271
nvall
closed
2 years ago
1
Order UMAP based on expression
#270
bioguy2018
closed
2 years ago
1
Trouble with plotMahal
#269
nvall
closed
2 years ago
1
Sub Clustering Sample
#268
ramziabb
closed
2 years ago
3
plotDiffHeatmap inside an If or TryCatch
#267
ramziabb
closed
2 years ago
2
recluster
#266
MayaCyTOFnewbie
closed
2 years ago
11
Error in plotExprHeatmap
#265
ramziabb
closed
2 years ago
3
Some markers not appearing in the results
#264
fcomnozz
closed
2 years ago
1
markers not included in single cell element by preData function
#263
SchellB
closed
2 years ago
2
Is dead cell removal part of the CATALYST pipeline
#262
gmbambo
closed
1 year ago
6
"subscript out of bounds" Error With "Figure 26" - Reference #242
#261
ramziabb
closed
2 years ago
2
runDR(..., cells = )
#260
kmincham
closed
1 year ago
10
Error in codes[, 1] : incorrect number of dimensions
#259
algebio
closed
2 years ago
4
Filter cells based on expression
#258
bioguy2018
closed
2 years ago
5
Multiple Group Experiments
#257
ramziabb
closed
2 years ago
8
UMAP/Clustering Reproducibility
#256
newmmat
closed
2 years ago
1
plotting custom cell annotation
#255
igordot
closed
2 years ago
1
Title for plotExprHeatmap()
#254
bioguy2018
closed
2 years ago
1
Interactive cell/cluster selection
#253
bioguy2018
closed
2 years ago
4
plotDiffHeatmap() issue
#252
ElinorWing
closed
2 years ago
4
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