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HelenaLC
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CATALYST
Cytometry dATa anALYsis Tools
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CATALYST::pbMDS produced plots with cluster cells clumped together on 1 side?
#350
denvercal1234GitHub
closed
1 year ago
1
How to ensure non-marker parameters are not used for clustering analyses (prepData(FACS=F))?
#349
denvercal1234GitHub
closed
1 year ago
2
Error in .check_cd_factor(u$x, u$point_col) : all(y %in% names(colData(x))) is not TRUE
#348
denvercal1234GitHub
closed
1 year ago
1
rowData(F37_channelCD3CD8_fcs_data_sce)$marker_class returned all "none"
#347
denvercal1234GitHub
closed
1 year ago
1
Faceting plotScatter by Metacluster
#346
LukaTandaric
closed
1 year ago
1
Mac ARM64 binary not available
#345
EmD0kusha
closed
6 months ago
3
plotExprs warning message: The dot-dot notation (`..ndensity..`) was deprecated in ggplot2 3.4.0.
#344
AHearn46
closed
1 year ago
1
Using R 3.6.3, CATALYST does not seem to let me order samples NOT by_time
#343
lucia1106
closed
1 year ago
1
plotDiffHeatmap CATALYST daFrame does not contain cluster lables
#342
lucia1106
closed
1 year ago
5
Add labels to points in plotAbundances
#341
MargolinGaby
closed
1 year ago
1
plotExprs: Visualizing missing markers for Spectral Flow cofactor setting
#340
DavidRach
closed
5 months ago
2
Duplicate ids in x-axis in freqheatmap
#339
Ind2022
closed
6 months ago
2
Merging/combining reclustered clusters into original SCE
#338
shanh1
closed
1 year ago
1
Updating colData
#337
shanh1
closed
1 year ago
1
Row annotation in Exprheatmap
#336
Ind2022
closed
1 year ago
13
Recluster with new panel
#335
shanh1
closed
1 year ago
6
ratio between subsets
#334
france-hub
closed
1 year ago
3
CyToF Data Compensation using CATALYST
#333
rana228
closed
1 year ago
11
Minimum spanning trees / Force-directed FlowSom graph
#332
M4artin
closed
1 year ago
1
tSNE contour coloured by density
#331
PKLiverpool
closed
1 year ago
1
Normalize based on the 99.99th percentile
#330
cr2106
closed
1 year ago
4
How to filter out high-intensity events for a marker for multiple FCS files?
#329
denvercal1234GitHub
closed
1 year ago
2
Error in GetChannels(fsom, colsToUse)
#328
klutzzzOOyyyq
closed
1 year ago
4
prepData on GatingSet
#327
FMartina87
closed
1 year ago
4
Change the cofactor used in arcsinh transformation for a selection of channels.
#326
Stein-ErikG
closed
1 year ago
1
Error in plotMahal
#325
aaron-tantk
closed
1 year ago
3
cluster orders in plotClusterExprs
#324
amoyguang1
closed
1 year ago
5
runDR following filterSCE... am I missing something?
#323
jeffsteimle
closed
1 year ago
2
Error in .check_sce(x, TRUE) : !is.null(x$cluster_id) is not TRUE
#322
simonekats
closed
1 year ago
1
Use of deprecated language
#321
gnzacevedo
closed
1 year ago
1
question with extractClusters function
#320
jenkinmt
closed
1 month ago
4
Rotate left annotation on plotExprHeatmap
#319
purisuto
closed
1 year ago
3
How to use plotClusterHeatmap for other clustering algorithms
#318
JingAnyaSun
closed
1 year ago
1
plotExprHeatmap function doesn't give output figure
#317
juniajvs
closed
1 year ago
2
plotExprHeatmap using mean values across conditions
#316
Tregwiz
closed
1 year ago
1
Not recognising markers in the panel
#315
Tregwiz
closed
1 year ago
3
Changing data point label size on MDS plot
#314
Tregwiz
closed
1 year ago
2
plotDR: Representation of multiple conditions
#313
BBarroso82
closed
1 year ago
1
Putting two different mergings in the cluster codes.
#312
purisuto
closed
1 year ago
1
Plotting manually assigned clusters on tSNE
#311
Tregwiz
closed
1 year ago
13
overlays
#310
jysmith6
closed
1 year ago
5
core dump during applyCutoffs
#309
bruggerk
opened
1 year ago
1
Subclustering
#307
france-hub
closed
1 year ago
2
assay type in cluster function
#306
rahilgholami
closed
1 year ago
1
filterSCE() in loop bug?
#305
83years
closed
1 year ago
1
Other causes of "all(unlist(md_cols) %in% names(md)) is not TRUE" error?
#304
83years
closed
1 year ago
1
Function that updates metadata
#303
purisuto
closed
1 year ago
2
Error with unsupervised clustering
#302
rmbarricarte
closed
1 year ago
3
plotAbundances plotting only one level of a metadata column
#301
matoriab
closed
6 months ago
5
Is there a way to export the raw frequency data?
#300
JingAnyaSun
closed
1 year ago
1
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