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HelenaLC
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CATALYST
Cytometry dATa anALYsis Tools
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NRS scores - extract values?
#402
alb16626
closed
1 week ago
2
T cell Subpopulation Percentage Showing as Zero in Differential Analysis Despite Presence in Clustering Results
#401
TongzhenXu
closed
1 week ago
1
Integrating Phenograph Algorithm into CATALYST for Differential Analysis and Visualization
#400
TongzhenXu
closed
1 month ago
2
Sample method blurb for CATALYST?
#399
denvercal1234GitHub
closed
1 month ago
4
Exporting raw expression values
#398
kmincham
closed
1 month ago
2
visualising specific clusters using plotPbExprs
#397
satsumayo
closed
2 months ago
1
plotMultiHeatmap-how to change the color
#396
TongzhenXu
closed
2 months ago
0
panel[[panel_cols$channel]] %in% colnames(fs) are not all TRUE
#395
Behind42
closed
3 weeks ago
3
How to change condition bar color in the plotExprHeatmap function
#394
TongzhenXu
closed
2 months ago
3
plotClusterHeatmap deprecated and now unable to extract the same data from the new Heatmap functions
#393
DrFedericaOrsenigo
closed
3 months ago
1
MDS plot
#392
galvaresborges
closed
2 months ago
2
Speeding up clustering & DR process
#391
fy711
closed
5 months ago
2
Import celltype annotations
#390
MDHowe4
closed
2 months ago
1
Convert Cell Proportions To Values
#389
ramziabb
closed
3 weeks ago
3
plotAbundances Adjusts Stacked Bar Width According to Grouping
#388
LukaTandaric
closed
6 months ago
3
Is rowData and colData switched in the clustering part of the differential vignette?
#387
Sandyna
closed
2 months ago
2
Compensation
#386
PhillipSsekamatte
closed
7 months ago
1
I cant't get all my features within sce
#385
PhillipSsekamatte
closed
7 months ago
0
pbMDS Function Stopped Working
#384
LukaTandaric
closed
6 months ago
4
plotDiffHeatmap sort by condition
#383
SamWell16
closed
8 months ago
4
plotDiffHeatmap: avoid failure when only one cluster remains
#382
SamGG
closed
2 months ago
4
plotDiffHeatmap : ambiguity when multiple clusterings could match
#381
SamGG
opened
8 months ago
2
Subset or filter out cells based on UMAP coordinates
#380
vmkalbskopf
closed
8 months ago
3
How to identify/visualize co-expression (correlation) between markers?
#379
WilliamMWei
closed
8 months ago
1
FlowSOM Clustering
#378
KStrange94
closed
6 months ago
5
More shapes than the 17 supported when connect paired samples with plotAbundances? #197
#377
M4artin
closed
9 months ago
1
Installation of CATALYST not working
#376
AdrienSchv
closed
10 months ago
4
library(CATALYST) Error
#375
yutingdai1125
closed
8 months ago
2
How to combine correctly SCE objects
#374
MargolinGaby
closed
10 months ago
1
Combining several SCE elements into one
#373
MargolinGaby
closed
10 months ago
5
Clustering by specific marker
#372
7DiM7
closed
8 months ago
1
How to increase the default colour scheme of CATALYST?
#371
zoqaiyum
closed
10 months ago
2
densvis, scuttle, scatter cannot be installed
#370
Jeffchingg
closed
11 months ago
3
Clarification about re-clustering/sub-clustering
#369
denvercal1234GitHub
closed
11 months ago
3
Importing back csv files exported from sce object will not preserve the unique cell id read in CATALYST
#368
denvercal1234GitHub
opened
1 year ago
0
How to use CATALYST::plotAbundances to plot cluster's abundance at certain metaclustering?
#367
denvercal1234GitHub
closed
1 year ago
3
filterSCE() version 1.22.0
#366
83years
opened
1 year ago
5
How to remove certain markers/channels after clustering with CATALYST::filterSCE?
#365
denvercal1234GitHub
closed
1 year ago
1
Using HARMONY Batch-corrected data for downstream analysis on CATALYST
#364
satsumayo
closed
1 year ago
1
Error in prepData(fs, panel, md, features = panel$fcs_colname) : all(unlist(md_cols) %in% names(md)) is not TRUE
#363
CalmRealistic
closed
1 year ago
7
Named UMAPs
#362
david-priest
closed
1 year ago
3
estCutoffs produces `Warning: NaNs produced`
#361
nilseling
closed
1 year ago
1
`sce2fcs`: Error in if (any(idx)) { : missing value where TRUE/FALSE needed, and Warning channel_alias: Multiple channels from one FCS are matched to the same alias!
#360
denvercal1234GitHub
closed
1 year ago
2
plotExprHeatmap function fails
#359
isimove
closed
8 months ago
4
`CATALYST::plotPbExprs` produces none of the cells at 0 expression and reducedDims.UMAP have cells squeezed at 0?
#358
denvercal1234GitHub
closed
1 year ago
4
Subset out of bounds issue
#357
LenHC
closed
8 months ago
5
`prepData()` unexpectedly create "exprs" if doing manual transformation using FlowJo for FACS?
#356
denvercal1234GitHub
closed
1 year ago
3
Clarification for arguments features and color_by in plotNRS()
#355
denvercal1234GitHub
closed
1 year ago
3
Subset out of bounds when creating single cell experiment
#354
Tregwiz
closed
8 months ago
2
Error in if (all(abs(as.numeric(labels_y) - as.numeric(y)) < 1e-04)) { : missing value where TRUE/FALSE needed
#353
denvercal1234GitHub
closed
6 months ago
2
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