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HelenaLC
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muscat
Multi-sample multi-group scRNA-seq analysis tools
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When we run mmDS with the method of nbimon
#39
yuyingxie
opened
4 years ago
1
running mmDS with method = "nbinom"
#38
yuyingxie
closed
4 years ago
7
Using method N
#37
yuyingxie
closed
4 years ago
0
Running sce
#36
yuyingxie
closed
4 years ago
3
Question: How does aggregateData() and AverageExpression() differ from each other?
#35
biobug16
closed
4 years ago
2
Suggestion for how to approach time the experimental variable with muscat?
#34
dpcook
closed
4 years ago
5
is there an R3.6 version for muscat?
#33
crazyhottommy
closed
4 years ago
2
Consider adding `verbose` option to `aggregateData`
#32
wmacnair
closed
3 years ago
1
Compute cluster markers gives Matrix subsetting error
#31
carlosf79
closed
4 years ago
8
error when loading the package
#30
lixin4306ren
closed
4 years ago
6
ERROR: Between-method concordance Prep. data
#29
priyamnarain
closed
4 years ago
6
pbMDS plot error
#28
priyamnarain
closed
4 years ago
2
Requirement on R version for installation
#27
drychkov
closed
4 years ago
1
Error with tutorial and sctransform
#26
domi84
closed
4 years ago
3
pbDS group_id NULL
#25
cnk113
closed
4 years ago
10
mmDS error: gradient function must return a numeric vector of length 4
#24
owenwilkins
opened
4 years ago
9
questions regarding setting up contrasts, # DGE genes
#23
kmh005
closed
4 years ago
1
Raw or normalized counts for pseudobulk?
#22
tkapello
closed
4 years ago
3
Fix sim
#21
ansonrel
closed
4 years ago
0
calcExprFreqs returns NA if single sample_id not present in cluster
#20
dpcook
closed
4 years ago
2
Applying muscat's DS analysis on CyTOF data
#19
mdmanurung
closed
4 years ago
2
Fix simData
#18
ansonrel
closed
4 years ago
0
add hierarchical clusters simulation option
#17
ansonrel
closed
4 years ago
0
Vignettes for simulating data
#16
klanita
closed
4 years ago
2
Error in `simData`: attempt to extract more than one element
#15
milanmlft
closed
4 years ago
1
No de genes with pseudobulk approach
#14
bio-la
closed
4 years ago
5
logGC
#13
BingbingYuan
closed
5 years ago
1
paired samples
#12
BingbingYuan
closed
5 years ago
3
Better home for the DE analysis pipeline
#11
LTLA
closed
4 years ago
6
Typofix
#10
federicomarini
closed
5 years ago
0
accept sce with no cells in some samples
#9
lpantano
closed
5 years ago
6
Error: Failed to install 'muscat' from GitHub
#8
erikadudki
closed
5 years ago
3
fixed issue with scater computeLibraryFactors
#7
markziemann
closed
5 years ago
2
Installation error
#6
MaxKman
closed
5 years ago
2
`runDS` not found
#5
lpantano
closed
5 years ago
3
fixes bug in pbMDS when there are 0 cells present for a particular sample-cluster combination
#4
wmacnair
closed
5 years ago
1
added sctransform-based implementation; code still crashes on some genes
#3
HelenaLC
closed
5 years ago
0
make sure `$data` element returned from run_edgeR is named + version bump
#2
markrobinsonuzh
closed
5 years ago
0
get names on results returned from run_edgeR()
#1
markrobinsonuzh
closed
5 years ago
0
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