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HelmholtzAI-Consultants-Munich
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oligo-designer-toolsuite
Develop custom oligo design pipelines.
https://oligo-designer-toolsuite.readthedocs.io/en/latest/
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MERFISH pipeline
#61
Open
lisa-sousa
opened
5 months ago
lisa-sousa
commented
5 months ago
[ ] revise primer generation
[ ] revise readout probes generation
[ ] revise codebook implementation
[ ] check if pipeline has all required property filters
[ ] check if pipeline has correct blast specificity parameters
[ ] check if pipeline has correct blast corss-hybridization parameters
[ ] add to pipeline the set scoring function + check if distance parameter has big influence on number of probes generated
[ ] assemble final probe → Primer1(T):A:RP1:A:target:A:RP2:T7(rc)