Implementation of the oligo_seq pipeline. In this pull request we applied the following changes:
Oligo efficiency scoring functions directly compute the oligo attributes they need.
The logging of the parameters in each pipeline step has been incorporated into 2 decorators (one for generative steps and anotherone for filtering steps)
the oligo seq pipeline has been developed and it is running
the pipelines now are generally split into two sections: the first one to genrate the genomic files, and the second one to generate and filter the oligos.
Implementation of the oligo_seq pipeline. In this pull request we applied the following changes:
Oligo efficiency scoring functions directly compute the oligo attributes they need.
The logging of the parameters in each pipeline step has been incorporated into 2 decorators (one for generative steps and anotherone for filtering steps)
the oligo seq pipeline has been developed and it is running
the pipelines now are generally split into two sections: the first one to genrate the genomic files, and the second one to generate and filter the oligos.