HenrikBengtsson TopDom issues

HenrikBengtsson / TopDom

R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes

https://cran.r-project.org/package=TopDom

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issues

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In rm(list = "idxs") : object 'idxs' not found

#24 stubbsrl opened 1 year ago
0
Update TopDom.R

#23 Delta-43 opened 1 year ago
0
Error at Step 4

#22 esebesty closed 3 years ago
1
Found new TopDom home

#21 HenrikBengtsson closed 4 years ago
1
ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [rbind]

#20 HenrikBengtsson closed 4 years ago
1
ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [data.frame]

#19 HenrikBengtsson closed 4 years ago
0
ROBUSTNESS: Add explicit 'stringsAsFactors' arguments [read.table]

#18 HenrikBengtsson closed 4 years ago
0
Error in wilcox.test.default(x = dia * scale, y = c(ups, downs), alternative = "less", : not enough (finite) 'x' observations

#17 HenrikBengtsson opened 4 years ago
0
REFERENCE: Hanjun Shin's PhD Thesis (partly on their TopDom development)

#16 HenrikBengtsson closed 4 years ago
0
Memory error

#15 Nohaosma opened 4 years ago
2
Error in last step

#14 KunFang93 closed 4 years ago
2
new feature

#13 chaoscicada opened 5 years ago
0
File Format Issue

#12 anupambh opened 5 years ago
1
Important note from package maintainer

#11 HenrikBengtsson opened 5 years ago
0
error when processing dense matrix

#10 musiccccc opened 5 years ago
2
Question about the Tags column

#9 QianzhaoJ opened 5 years ago
4
BUG: TopDom() may produce Error in `[<-.data.frame`(`*tmp*`, , "to.coord", value = c(NA, 2500, 247500 : replacement has 3 rows, data has 1

#8 HenrikBengtsson closed 5 years ago
2
overlapScores(a, b): clarify which of 'a' and 'b' is the reference

#7 HenrikBengtsson closed 5 years ago
1
Add countsByRegion(data, region) to extract count data for a given region

#6 HenrikBengtsson closed 6 years ago
0
Add TopDom_0.0.2() function

#5 HenrikBengtsson closed 6 years ago
0
BUG: Error in if (x[cp$cp[i]] >= x[cp$cp[i] - 1] && x[cp$cp[i]] >= x[cp$cp[i] + : missing value where TRUE/FALSE needed

#4 HenrikBengtsson closed 6 years ago
1
BUG: TopDom(statFilter = TRUE) seems incorrect

#3 HenrikBengtsson closed 5 years ago
4
Implement the overlap score

#2 HenrikBengtsson closed 6 years ago
0
REFERENCE: TopDom Manual

#1 HenrikBengtsson closed 6 years ago
0