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HighlanderLab
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tree_seq_pipeline
Pipeline to infer tree sequences with different datasets
MIT License
3
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7
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Updating the rule for preparing vcf
#22
gmafrafortuna
closed
1 year ago
0
Cleaning up
#21
janaobsteter
closed
1 year ago
0
Adding Eddie documents
#20
janaobsteter
closed
1 year ago
0
add condition to ignore multi-allelic sites
#19
gmafrafortuna
closed
1 year ago
0
shapeit4 vs INFO
#18
gmafrafortuna
closed
1 year ago
1
updated merge rule
#17
gmafrafortuna
closed
1 year ago
0
Adding the config and log
#16
janaobsteter
closed
1 year ago
0
Cleaning up the workflow
#15
janaobsteter
closed
1 year ago
0
updated phasing rule
#14
gmafrafortuna
closed
1 year ago
0
Fixing connectivity issues in the pipeline
#13
janaobsteter
closed
1 year ago
0
updated split and merge rules
#12
gmafrafortuna
closed
1 year ago
0
Adding the snakemake folder structure, adding a general Snakefile to …
#11
janaobsteter
closed
1 year ago
0
some initial environment files for testing
#10
gmafrafortuna
closed
1 year ago
0
improved code
#9
gmafrafortuna
closed
1 year ago
0
Adding the scripts to prepare samples file and create the trees
#8
janaobsteter
closed
1 year ago
3
fixed to run over multiple chr
#7
gmafrafortuna
closed
1 year ago
0
Added the rules to extract major allele
#6
janaobsteter
closed
1 year ago
1
Develop installation instructions/README
#5
gregorgorjanc
opened
1 year ago
1
Half functioning script.
#4
gmafrafortuna
closed
1 year ago
0
Adding the steps document
#3
janaobsteter
closed
1 year ago
2
Creating initial directory structure and adding script for data preparation
#2
janaobsteter
closed
1 year ago
0
Create directories and add the first rule for data preparation
#1
janaobsteter
closed
1 year ago
0
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