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HopkinsIDD
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cholera-mapping-pipeline
Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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Fix UN pop adjustment
#547
javierps
closed
9 months ago
0
Fix no_w stan input data
#546
javierps
closed
9 months ago
0
Fix shapefile ADM0 intersection and population adjustment computation
#545
javierps
closed
9 months ago
0
Drop spatial parameters in non-spatial run
#544
javierps
closed
9 months ago
0
Dev cdr updates
#543
QLLZ
closed
9 months ago
0
Update plot_DroppedData_table.R
#542
QLLZ
closed
10 months ago
0
Adjust country population to UN estimate
#541
javierps
closed
10 months ago
0
Update postprocessing
#540
javierps
closed
8 months ago
0
Adm0 od threshold
#539
eclee25
closed
10 months ago
0
Dev dummy censoring
#538
eclee25
closed
10 months ago
0
Better joining of output shapefiles and postprocessed objects
#537
javierps
closed
10 months ago
0
change adm0 od threshold to 5000 cases from 10000
#536
eclee25
closed
10 months ago
0
Dummy varibales for censoring
#535
javierps
closed
10 months ago
1
Dev cdr updates
#534
eclee25
closed
10 months ago
0
Heuristic for small censored values
#533
javierps
closed
10 months ago
1
fix sigma_std_dev_w, std_dev_w prior N(5,0.5)
#532
eclee25
closed
10 months ago
1
fix sigma_std_dev_w to 1, std_dev_w prior N(0,1)
#531
eclee25
closed
10 months ago
1
Dev rm uloctime rho prior sdw prior
#530
eclee25
closed
10 months ago
1
no-mixture sd_w prior mean is 5
#529
eclee25
closed
10 months ago
1
ADM0 OD + drop by oc
#528
javierps
closed
10 months ago
0
remove data likelihood
#527
eclee25
closed
10 months ago
1
Create plot_district_mai_comparison_histogram.R
#526
QLLZ
closed
10 months ago
0
update colors for admin coverage plot
#525
eclee25
closed
10 months ago
0
Update rho prior
#524
javierps
closed
10 months ago
1
Add adm_0 overdispersion parameter based on maximum number of cases
#523
javierps
closed
10 months ago
1
remove u_loctime_combs from stan_data
#522
javierps
closed
10 months ago
0
Dev postprocess
#521
QLLZ
closed
10 months ago
1
Create plot_annual_data_comparison.R
#520
QLLZ
closed
10 months ago
1
change rho prior to be a more centered distrib for testing
#519
eclee25
closed
10 months ago
1
first try to fix u_combs in stan_input for multiyear observations
#518
QLLZ
closed
10 months ago
1
update github actions version
#517
eclee25
closed
11 months ago
0
Dev postprocess updates
#516
QLLZ
closed
11 months ago
0
Update shapefile_utils.R
#515
QLLZ
closed
11 months ago
0
Compute summary of total cases across conutries
#514
javierps
closed
11 months ago
0
Indicate source of output shapefile data
#513
javierps
closed
11 months ago
0
Extract lp spatial coverage and observation counts for supp table
#512
javierps
closed
11 months ago
0
Keep intersections between small location periods and grid cells
#511
javierps
closed
11 months ago
0
Code change to suppress duplicate warnings
#510
fang19911030
closed
11 months ago
0
Attempt to fix input coord system
#509
javierps
closed
11 months ago
0
Risk cat as cumulative probability of being above threshold
#508
javierps
closed
11 months ago
0
Update hardcoded mixture prior to beta(1, 3)
#507
javierps
closed
11 months ago
0
Dev cdr fix
#506
QLLZ
closed
11 months ago
0
Dev cdr fix
#505
QLLZ
closed
11 months ago
0
New pipeline js
#504
jfsong100
opened
11 months ago
0
Dev reset defaults
#503
eclee25
closed
11 months ago
0
Reset parameter defaults for production runs
#502
javierps
closed
11 months ago
0
Compute generated observations
#501
javierps
closed
11 months ago
1
Dev cdr pop plot
#500
QLLZ
closed
11 months ago
0
Fix adm0 clipping gc
#499
javierps
closed
11 months ago
0
Pre-production code review
#498
eclee25
closed
11 months ago
0
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