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HopkinsIDD
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cholera-mapping-pipeline
Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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Update country_data_report.Rmd
#497
QLLZ
closed
12 months ago
0
Option to use mixture in sd_w prior
#496
javierps
closed
12 months ago
0
Drop output shapefiles if not covered in all time slices
#495
javierps
closed
12 months ago
0
Get output admin units from db
#494
javierps
closed
1 year ago
0
DAGAR fix
#493
javierps
closed
1 year ago
0
Drop admin0 level censored obs
#492
javierps
closed
12 months ago
0
Fix bug in number of rows for subnational data imputation
#491
javierps
closed
1 year ago
0
Fix setup with no spatial effect
#490
javierps
closed
1 year ago
0
compare new est with lancet and 2021 interim
#489
eclee25
closed
1 year ago
0
Dev postprocess continent updates
#488
QLLZ
closed
1 year ago
0
Fix adm0 clipping v3
#487
javierps
closed
1 year ago
0
Dev cdr fix
#486
QLLZ
closed
1 year ago
0
Postprocess results for continent outputs
#485
javierps
closed
12 months ago
0
Second fix to adm0 clipping
#484
javierps
closed
1 year ago
0
create a separate file for installing packages
#483
fang19911030
closed
10 months ago
0
Fix imputation
#482
javierps
closed
1 year ago
0
filter intersecting shapefiles
#481
javierps
closed
1 year ago
0
extract duplicate code as function
#480
fang19911030
closed
7 months ago
0
Dev pfang
#479
fang19911030
closed
1 year ago
0
Dev cdr updates
#478
eclee25
closed
1 year ago
0
add file for get_genquant and update .gitignore
#477
fang19911030
closed
1 year ago
0
create file get_genquant.R
#476
fang19911030
closed
1 year ago
0
separate sfrac config options
#475
eclee25
closed
12 months ago
0
Drop multi year adm0 observations with config option
#474
javierps
closed
1 year ago
0
Drop low sfrac from output shapefiles
#473
javierps
closed
1 year ago
0
Option for no spatial random effect
#472
javierps
closed
1 year ago
0
Clip all data shapefiles to the adm0 output shapefile
#471
javierps
closed
1 year ago
0
Update country_data_report.Rmd
#470
QLLZ
closed
1 year ago
0
Fix imputation to use censored sub-national data
#469
javierps
closed
1 year ago
0
update initialization to higher values of rho, std_dev_w and lambda
#468
javierps
closed
1 year ago
0
Dev cdr figure update
#467
QLLZ
closed
1 year ago
0
Update get_sf.R
#466
QLLZ
closed
1 year ago
0
fix config writer for dev_newobsmodel
#465
eclee25
closed
1 year ago
2
Add CoV and variance to genquant
#464
javierps
closed
1 year ago
0
add 1 per 2000 and 1 per 5000 thresh to at-risk pop
#463
eclee25
closed
1 year ago
0
Dev stan input processing fix
#462
QLLZ
closed
1 year ago
0
add test for check_stan_model
#461
fang19911030
opened
1 year ago
0
ZWE 2016-20
#460
eclee25
opened
1 year ago
11
ZWE 2011-15
#459
eclee25
opened
1 year ago
11
ZMB 2016-20
#458
eclee25
opened
1 year ago
12
ZMB 2011-15
#457
eclee25
opened
1 year ago
13
ZAF 2016-20
#456
eclee25
opened
1 year ago
16
ZAF 2011-15
#455
eclee25
opened
1 year ago
18
UGA 2016-20
#454
eclee25
opened
1 year ago
12
UGA 2011-15
#453
eclee25
opened
1 year ago
13
TZA 2016-20
#452
eclee25
opened
1 year ago
22
TZA 2011-15
#451
eclee25
opened
1 year ago
14
TGO 2016-20
#450
eclee25
opened
1 year ago
12
TGO 2011-15
#449
eclee25
opened
1 year ago
12
TCD 2016-20
#448
eclee25
opened
1 year ago
10
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