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HopkinsIDD
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gavi_vimc_cholera
VIMC cholera model - estimating impact of oral cholera vaccine
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add package data and package data creation script
#91
christinaalam
opened
2 months ago
0
rm raw VE data from Xu et al 2024
#90
eclee25
closed
2 months ago
0
rm unnecessary input data files and add a new one that represents the…
#89
eclee25
closed
2 months ago
0
rgdal replacement and remove "input_data" dependencies
#88
christinaalam
closed
2 months ago
0
Drc case study
#87
christinaalam
closed
4 months ago
0
Diagnostic report updates
#86
christinaalam
closed
7 months ago
0
use bangladesh incidence rate raster for targeting
#85
christinaalam
closed
8 months ago
0
possible bugfix for the cache needed for functions inside export_coun…
#84
christinaalam
closed
9 months ago
0
Montagu cache
#83
eclee25
closed
9 months ago
0
limit k:j loop based on VE duration
#82
eclee25
closed
9 months ago
0
Ocv ecl debug
#81
eclee25
closed
9 months ago
0
Ocv1 ocv2 cleanup
#80
eclee25
closed
9 months ago
0
fix adjusted_montagu_coverage issue
#79
eclee25
closed
9 months ago
0
Ocv1 ocv2 new implementation
#78
christinaalam
closed
9 months ago
0
202110gavi-3 vimc core run configs
#77
eclee25
closed
11 months ago
0
included previously commented out lines in run_model to set random se…
#76
eclee25
closed
10 months ago
0
Testing calam
#75
christinaalam
closed
11 months ago
1
Allow for the vaccine protection to last from year 0 to year 5
#74
KaiyueZou
closed
1 year ago
0
Potential Update in the Future
#73
KaiyueZou
opened
1 year ago
0
rm test config with different runname
#72
eclee25
closed
1 year ago
0
test config
#71
eclee25
closed
1 year ago
0
Param update
#70
eclee25
closed
1 year ago
0
updated configs for testing and new launch
#69
eclee25
closed
1 year ago
0
minor change of figure2 and table3
#68
eclee25
closed
1 year ago
0
Kz ve diagnostics
#67
eclee25
closed
2 months ago
1
A small typo detected that didn't impact the model output
#66
KaiyueZou
opened
2 years ago
0
Kaiyue
#65
eclee25
closed
1 year ago
0
Admin sep to kaiyue branch
#64
KaiyueZou
closed
2 years ago
0
load_baseline_incidence
#63
Hanmeng-Xu
opened
2 years ago
0
load_shapefile_by_country
#62
Hanmeng-Xu
opened
2 years ago
0
surveillance_true_confirmation_rate
#61
Hanmeng-Xu
opened
2 years ago
0
surveillance_pop_weighted_incid
#60
Hanmeng-Xu
opened
2 years ago
0
load_worldpop_by_country
#59
Hanmeng-Xu
opened
2 years ago
0
align_rasters
#58
eclee25
opened
2 years ago
0
Error message when running the no-vaccination scenarios.
#57
Hanmeng-Xu
closed
2 years ago
1
Error message in surveillance_add_rc_new_row() function
#56
Hanmeng-Xu
closed
2 years ago
1
Question about surveillance_create_expectedCases()
#55
Hanmeng-Xu
opened
2 years ago
1
Noted: the NA district-level incidence rate will be replaced by 0 for simplicity purpose
#54
KaiyueZou
opened
2 years ago
0
Doesn't support country-level skip years because both levels of districts are being simulated and they have different latest tagetted years
#53
KaiyueZou
opened
2 years ago
0
Noted: lambda and pop raster sometimes don't agree with each other in those areas covered by rivers
#52
KaiyueZou
opened
2 years ago
0
Noted: now we assume that the population raster during the same year remains constant -- from the beginning of the year when vacc is being carried out to the end of the year when the cases are summarized
#51
KaiyueZou
opened
2 years ago
0
Noted: now across each year, the same district will be assigned with a different confirmation rate value
#50
KaiyueZou
closed
2 years ago
1
Noted: the true cases are saved as external dataset, but the suspected cases will be transferred around for vacc decision-making purposes
#49
KaiyueZou
closed
2 years ago
1
Now all the input raster are saved in memory, which may be burdensome and slow down the process
#48
KaiyueZou
closed
2 years ago
1
Each year's newly updated incidence rates are averaged across layers, on which is the targeting decision based
#47
KaiyueZou
closed
2 years ago
1
A better way to organize the raw output
#46
KaiyueZou
opened
2 years ago
1
Noted: now we assume that the vacc happens at the beginning of each year and will affect that year's cases
#45
KaiyueZou
opened
2 years ago
0
Maybe create a separate check on "no-vaccination" scenario to boost efficiency
#44
KaiyueZou
closed
2 years ago
1
The external dataset that contains the confirmation rate has not been created and there is no code to accommodate its reading in yet
#43
KaiyueZou
closed
2 years ago
1
Noted: check package versions if exactextractr::exact_extract doesn't work as supposed
#42
KaiyueZou
opened
2 years ago
0
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