TIS model code
1
stars
0
forks
source link
TIS Models
|
Name |
M+/M- |
M++ |
Exv. |
#sep-P |
#sep-S |
#sep-B |
| RNA |
DT13 |
DH |
N/A |
WCA |
3 |
3 |
2 |
| RNA |
DT15 |
Coulomb |
Coulomb |
mWCA |
3 |
3 |
2 |
| RNA |
DHT18 |
|
N/A |
|
|
|
|
| RNA |
NHT19 |
DH |
PMF |
mWCA |
4 |
4 |
2 |
| DNA |
CHT18 |
DH |
N/A |
WCA |
3 |
3 |
2 |
| DNA |
TBA |
DH |
PMF |
|
|
|
|
Molecular topology
- Linear S: linear nucleic acid whose 5'-end starts from sugar
- Linear P: linear nucleic acid whose 5'-end starts from phosphate
- Circular: circular nucleic acid
Number of particles
|
Linear S |
Linear P |
Circular (always P) |
| nucleotides |
N |
N |
N |
| P |
N-1 |
N |
N |
| S |
N |
N |
N |
| B |
N |
N |
N |
| nmp |
3N-1 |
3N |
3N |
Number of bonds
|
Linear S |
Linear P |
Circular (always P) |
| PS |
N-1 |
N |
N |
| SB |
N |
N |
N |
| SP |
N-1 |
N-1 |
N |
| Total |
3N-2 |
3N-1 |
3N |
Number of angles
|
Linear S |
Linear P |
Circular (always P) |
| PSB |
N-1 |
N |
N |
| PSP |
N-2 |
N-1 |
N |
| BSP |
N-1 |
N-1 |
N |
| SPS |
N-1 |
N-1 |
N |
| Total |
4N-5 |
4N-3 |
4N |
Tertiary stacks
tst-dist
- share with secondary stack (
exclusive = False)
- exclusively tertiary stack alone (
exclusive = True)